Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20441

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20436 and SM_b20441 are separated by 254 nucleotidesSM_b20441 and SM_b20442 are separated by 39 nucleotides SM_b20436: SM_b20436 - nitrate transporter protein, at 450,978 to 452,252 _b20436 SM_b20441: SM_b20441 - transcriptional regulator, at 452,507 to 453,247 _b20441 SM_b20442: SM_b20442 - substrate-binding protein, at 453,287 to 454,261 _b20442 Position (kb) 452 453 454Strain fitness (log2 ratio) -2 -1 0 1at 451.656 kb on + strand, within SM_b20436at 451.659 kb on + strand, within SM_b20436at 451.659 kb on + strand, within SM_b20436at 451.660 kb on - strand, within SM_b20436at 451.710 kb on + strand, within SM_b20436at 451.726 kb on - strand, within SM_b20436at 451.768 kb on - strand, within SM_b20436at 451.784 kb on + strand, within SM_b20436at 451.784 kb on + strand, within SM_b20436at 451.784 kb on + strand, within SM_b20436at 451.842 kb on + strand, within SM_b20436at 451.842 kb on + strand, within SM_b20436at 451.843 kb on - strand, within SM_b20436at 451.843 kb on - strand, within SM_b20436at 451.843 kb on - strand, within SM_b20436at 451.843 kb on - strand, within SM_b20436at 451.843 kb on - strand, within SM_b20436at 451.843 kb on - strand, within SM_b20436at 451.843 kb on - strand, within SM_b20436at 451.843 kb on - strand, within SM_b20436at 451.843 kb on - strand, within SM_b20436at 451.998 kb on + strand, within SM_b20436at 452.008 kb on + strand, within SM_b20436at 452.008 kb on + strand, within SM_b20436at 452.008 kb on + strand, within SM_b20436at 452.008 kb on + strand, within SM_b20436at 452.009 kb on - strand, within SM_b20436at 452.009 kb on - strand, within SM_b20436at 452.016 kb on + strand, within SM_b20436at 452.017 kb on - strandat 452.019 kb on + strand, within SM_b20436at 452.019 kb on + strand, within SM_b20436at 452.019 kb on + strand, within SM_b20436at 452.161 kb on + strandat 452.162 kb on - strandat 452.250 kb on + strandat 452.345 kb on - strandat 452.441 kb on + strandat 452.441 kb on + strandat 452.447 kb on - strandat 452.670 kb on + strand, within SM_b20441at 452.670 kb on + strand, within SM_b20441at 452.670 kb on + strand, within SM_b20441at 452.671 kb on - strand, within SM_b20441at 452.720 kb on + strand, within SM_b20441at 452.720 kb on + strand, within SM_b20441at 452.720 kb on + strand, within SM_b20441at 452.721 kb on - strand, within SM_b20441at 452.721 kb on - strand, within SM_b20441at 452.721 kb on - strand, within SM_b20441at 452.721 kb on - strand, within SM_b20441at 452.721 kb on - strand, within SM_b20441at 452.721 kb on - strand, within SM_b20441at 452.857 kb on + strand, within SM_b20441at 452.858 kb on - strand, within SM_b20441at 452.858 kb on - strand, within SM_b20441at 453.044 kb on + strand, within SM_b20441at 453.044 kb on + strand, within SM_b20441at 453.386 kb on + strand, within SM_b20442at 453.387 kb on - strand, within SM_b20442at 453.461 kb on + strand, within SM_b20442at 453.461 kb on + strand, within SM_b20442at 453.461 kb on + strand, within SM_b20442at 453.462 kb on - strand, within SM_b20442at 453.542 kb on - strand, within SM_b20442at 453.599 kb on + strand, within SM_b20442at 453.600 kb on - strand, within SM_b20442at 453.610 kb on + strand, within SM_b20442at 453.610 kb on + strand, within SM_b20442at 453.610 kb on + strand, within SM_b20442at 453.611 kb on - strand, within SM_b20442at 453.643 kb on + strand, within SM_b20442at 453.657 kb on + strand, within SM_b20442at 453.658 kb on - strand, within SM_b20442at 453.680 kb on + strand, within SM_b20442at 453.680 kb on + strand, within SM_b20442at 453.681 kb on - strand, within SM_b20442at 453.719 kb on + strand, within SM_b20442at 453.719 kb on + strand, within SM_b20442at 453.720 kb on - strand, within SM_b20442at 453.720 kb on - strand, within SM_b20442at 453.722 kb on + strand, within SM_b20442at 453.796 kb on - strand, within SM_b20442at 453.812 kb on + strand, within SM_b20442at 453.872 kb on + strand, within SM_b20442at 453.873 kb on - strand, within SM_b20442at 453.873 kb on - strand, within SM_b20442at 453.962 kb on - strand, within SM_b20442at 453.962 kb on - strand, within SM_b20442

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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451,656 + SM_b20436 0.53 -0.7
451,659 + SM_b20436 0.53 -0.2
451,659 + SM_b20436 0.53 -1.0
451,660 - SM_b20436 0.53 -0.2
451,710 + SM_b20436 0.57 -0.4
451,726 - SM_b20436 0.59 +0.2
451,768 - SM_b20436 0.62 -0.3
451,784 + SM_b20436 0.63 -0.4
451,784 + SM_b20436 0.63 +0.2
451,784 + SM_b20436 0.63 +0.6
451,842 + SM_b20436 0.68 +1.1
451,842 + SM_b20436 0.68 +0.7
451,843 - SM_b20436 0.68 -0.7
451,843 - SM_b20436 0.68 -0.3
451,843 - SM_b20436 0.68 +0.9
451,843 - SM_b20436 0.68 -0.4
451,843 - SM_b20436 0.68 +1.0
451,843 - SM_b20436 0.68 +1.4
451,843 - SM_b20436 0.68 -1.4
451,843 - SM_b20436 0.68 +1.4
451,843 - SM_b20436 0.68 +1.5
451,998 + SM_b20436 0.80 +0.1
452,008 + SM_b20436 0.81 +1.0
452,008 + SM_b20436 0.81 +0.4
452,008 + SM_b20436 0.81 +0.1
452,008 + SM_b20436 0.81 -1.3
452,009 - SM_b20436 0.81 -0.8
452,009 - SM_b20436 0.81 -0.4
452,016 + SM_b20436 0.81 +0.1
452,017 - +1.7
452,019 + SM_b20436 0.82 +0.3
452,019 + SM_b20436 0.82 +0.4
452,019 + SM_b20436 0.82 -0.2
452,161 + -0.7
452,162 - +1.0
452,250 + +0.7
452,345 - -0.9
452,441 + -0.4
452,441 + -0.4
452,447 - -0.1
452,670 + SM_b20441 0.22 +0.6
452,670 + SM_b20441 0.22 +0.5
452,670 + SM_b20441 0.22 +0.8
452,671 - SM_b20441 0.22 +1.2
452,720 + SM_b20441 0.29 -0.2
452,720 + SM_b20441 0.29 -0.1
452,720 + SM_b20441 0.29 -0.4
452,721 - SM_b20441 0.29 -0.1
452,721 - SM_b20441 0.29 +0.3
452,721 - SM_b20441 0.29 +0.0
452,721 - SM_b20441 0.29 -0.3
452,721 - SM_b20441 0.29 -0.7
452,721 - SM_b20441 0.29 -0.1
452,857 + SM_b20441 0.47 +0.6
452,858 - SM_b20441 0.47 +0.3
452,858 - SM_b20441 0.47 +0.9
453,044 + SM_b20441 0.72 +0.3
453,044 + SM_b20441 0.72 +0.6
453,386 + SM_b20442 0.10 +0.3
453,387 - SM_b20442 0.10 -0.0
453,461 + SM_b20442 0.18 +1.1
453,461 + SM_b20442 0.18 +0.3
453,461 + SM_b20442 0.18 +1.6
453,462 - SM_b20442 0.18 -0.3
453,542 - SM_b20442 0.26 -0.8
453,599 + SM_b20442 0.32 +1.2
453,600 - SM_b20442 0.32 +0.7
453,610 + SM_b20442 0.33 +0.3
453,610 + SM_b20442 0.33 -0.6
453,610 + SM_b20442 0.33 -0.4
453,611 - SM_b20442 0.33 +1.5
453,643 + SM_b20442 0.37 -0.9
453,657 + SM_b20442 0.38 -2.2
453,658 - SM_b20442 0.38 -0.2
453,680 + SM_b20442 0.40 -0.7
453,680 + SM_b20442 0.40 -1.2
453,681 - SM_b20442 0.40 +0.5
453,719 + SM_b20442 0.44 -0.1
453,719 + SM_b20442 0.44 -0.7
453,720 - SM_b20442 0.44 +0.2
453,720 - SM_b20442 0.44 -0.2
453,722 + SM_b20442 0.45 +0.3
453,796 - SM_b20442 0.52 +0.0
453,812 + SM_b20442 0.54 +0.1
453,872 + SM_b20442 0.60 -1.3
453,873 - SM_b20442 0.60 +0.3
453,873 - SM_b20442 0.60 -0.3
453,962 - SM_b20442 0.69 -0.4
453,962 - SM_b20442 0.69 -0.4

Or see this region's nucleotide sequence