Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20346 and SM_b20347 are separated by 92 nucleotides SM_b20347 and SM_b20348 are separated by 186 nucleotides SM_b20348 and SM_b20349 are separated by 68 nucleotides
SM_b20346: SM_b20346 - efflux protein, at 353,526 to 354,680
_b20346
SM_b20347: SM_b20347 - transcriptional regulator, at 354,773 to 355,381
_b20347
SM_b20348: SM_b20348 - hypothetical protein, at 355,568 to 356,395
_b20348
SM_b20349: SM_b20349 - sugar ABC transporter, at 356,464 to 357,405
_b20349
Position (kb) 355
356
357 Strain fitness (log2 ratio) -2
-1
0
1
2 at 354.687 kb on + strand at 354.989 kb on - strand, within SM_b20347 at 354.989 kb on - strand, within SM_b20347 at 354.989 kb on - strand, within SM_b20347 at 355.224 kb on + strand, within SM_b20347 at 355.285 kb on - strand, within SM_b20347 at 355.290 kb on + strand, within SM_b20347 at 355.480 kb on - strand at 355.480 kb on - strand at 355.480 kb on - strand at 355.551 kb on + strand at 355.552 kb on - strand at 355.808 kb on - strand, within SM_b20348 at 355.808 kb on - strand, within SM_b20348 at 355.856 kb on + strand, within SM_b20348 at 355.856 kb on + strand, within SM_b20348 at 355.888 kb on + strand, within SM_b20348 at 355.888 kb on + strand, within SM_b20348 at 355.889 kb on - strand, within SM_b20348 at 355.889 kb on - strand, within SM_b20348 at 355.892 kb on + strand, within SM_b20348 at 355.893 kb on - strand, within SM_b20348 at 356.028 kb on - strand, within SM_b20348 at 356.028 kb on - strand, within SM_b20348 at 356.028 kb on - strand at 356.028 kb on - strand, within SM_b20348 at 356.559 kb on + strand, within SM_b20349 at 356.861 kb on - strand, within SM_b20349 at 356.920 kb on + strand, within SM_b20349 at 356.920 kb on + strand, within SM_b20349 at 356.920 kb on + strand, within SM_b20349 at 356.921 kb on - strand, within SM_b20349 at 356.921 kb on - strand, within SM_b20349 at 356.921 kb on - strand, within SM_b20349 at 357.055 kb on + strand, within SM_b20349 at 357.073 kb on - strand, within SM_b20349 at 357.106 kb on - strand, within SM_b20349 at 357.259 kb on + strand, within SM_b20349 at 357.260 kb on - strand, within SM_b20349 at 357.298 kb on + strand, within SM_b20349 at 357.299 kb on - strand, within SM_b20349
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 354,687 + +0.4 354,989 - SM_b20347 0.35 +1.0 354,989 - SM_b20347 0.35 +1.1 354,989 - SM_b20347 0.35 -0.7 355,224 + SM_b20347 0.74 +1.5 355,285 - SM_b20347 0.84 -0.4 355,290 + SM_b20347 0.85 +1.4 355,480 - -0.9 355,480 - -0.8 355,480 - -0.8 355,551 + +0.6 355,552 - -0.7 355,808 - SM_b20348 0.29 +0.7 355,808 - SM_b20348 0.29 -0.6 355,856 + SM_b20348 0.35 -0.5 355,856 + SM_b20348 0.35 +1.3 355,888 + SM_b20348 0.39 -0.3 355,888 + SM_b20348 0.39 +0.5 355,889 - SM_b20348 0.39 +0.8 355,889 - SM_b20348 0.39 -0.3 355,892 + SM_b20348 0.39 +0.8 355,893 - SM_b20348 0.39 +0.5 356,028 - SM_b20348 0.56 -1.7 356,028 - SM_b20348 0.56 +1.8 356,028 - +2.3 356,028 - SM_b20348 0.56 -0.8 356,559 + SM_b20349 0.10 +0.3 356,861 - SM_b20349 0.42 +1.0 356,920 + SM_b20349 0.48 -0.8 356,920 + SM_b20349 0.48 -2.3 356,920 + SM_b20349 0.48 -0.5 356,921 - SM_b20349 0.49 -0.0 356,921 - SM_b20349 0.49 -0.1 356,921 - SM_b20349 0.49 -0.1 357,055 + SM_b20349 0.63 -0.9 357,073 - SM_b20349 0.65 -0.2 357,106 - SM_b20349 0.68 +1.6 357,259 + SM_b20349 0.84 -1.8 357,260 - SM_b20349 0.85 -0.1 357,298 + SM_b20349 0.89 +1.1 357,299 - SM_b20349 0.89 -0.2
Or see this region's nucleotide sequence