Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20345

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20344 and SM_b20345 are separated by 136 nucleotidesSM_b20345 and SM_b20346 are separated by 28 nucleotides SM_b20344: SM_b20344 - transcriptional regulator, at 349,255 to 350,211 _b20344 SM_b20345: SM_b20345 - efflux protein, at 350,348 to 353,497 _b20345 SM_b20346: SM_b20346 - efflux protein, at 353,526 to 354,680 _b20346 Position (kb) 350 351 352 353 354Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 349.521 kb on + strand, within SM_b20344at 349.583 kb on - strand, within SM_b20344at 349.583 kb on - strand, within SM_b20344at 349.583 kb on - strand, within SM_b20344at 349.689 kb on + strand, within SM_b20344at 349.822 kb on + strand, within SM_b20344at 349.822 kb on + strand, within SM_b20344at 349.822 kb on + strand, within SM_b20344at 349.822 kb on + strand, within SM_b20344at 349.823 kb on - strand, within SM_b20344at 349.887 kb on - strand, within SM_b20344at 349.887 kb on - strand, within SM_b20344at 349.887 kb on - strand, within SM_b20344at 349.968 kb on - strand, within SM_b20344at 350.037 kb on - strand, within SM_b20344at 350.037 kb on - strand, within SM_b20344at 350.037 kb on - strand, within SM_b20344at 350.037 kb on - strand, within SM_b20344at 350.039 kb on - strand, within SM_b20344at 350.039 kb on - strand, within SM_b20344at 350.075 kb on + strand, within SM_b20344at 350.238 kb on + strandat 350.243 kb on - strandat 350.408 kb on + strandat 350.598 kb on - strandat 350.598 kb on - strandat 350.959 kb on - strand, within SM_b20345at 351.065 kb on - strand, within SM_b20345at 351.065 kb on - strand, within SM_b20345at 351.165 kb on + strand, within SM_b20345at 351.558 kb on - strand, within SM_b20345at 351.690 kb on + strand, within SM_b20345at 351.690 kb on + strand, within SM_b20345at 351.690 kb on + strand, within SM_b20345at 351.690 kb on + strand, within SM_b20345at 351.690 kb on + strand, within SM_b20345at 351.691 kb on - strand, within SM_b20345at 351.691 kb on - strand, within SM_b20345at 351.691 kb on - strand, within SM_b20345at 351.691 kb on - strand, within SM_b20345at 351.949 kb on - strand, within SM_b20345at 352.011 kb on + strand, within SM_b20345at 352.032 kb on + strand, within SM_b20345at 352.077 kb on + strand, within SM_b20345at 352.077 kb on + strand, within SM_b20345at 352.078 kb on - strand, within SM_b20345at 352.078 kb on - strand, within SM_b20345at 352.338 kb on + strand, within SM_b20345at 352.338 kb on + strand, within SM_b20345at 352.338 kb on + strand, within SM_b20345at 352.339 kb on - strand, within SM_b20345at 352.530 kb on + strand, within SM_b20345at 352.557 kb on + strand, within SM_b20345at 352.662 kb on + strand, within SM_b20345at 352.663 kb on - strand, within SM_b20345at 352.663 kb on - strand, within SM_b20345at 352.684 kb on + strand, within SM_b20345at 352.907 kb on + strand, within SM_b20345at 352.907 kb on + strand, within SM_b20345at 352.907 kb on + strand, within SM_b20345at 352.907 kb on + strand, within SM_b20345at 352.909 kb on + strand, within SM_b20345at 352.910 kb on - strand, within SM_b20345at 352.912 kb on - strand, within SM_b20345at 352.912 kb on - strand, within SM_b20345at 352.944 kb on - strand, within SM_b20345at 352.944 kb on - strand, within SM_b20345at 353.013 kb on + strand, within SM_b20345at 353.143 kb on - strand, within SM_b20345at 353.143 kb on - strand, within SM_b20345at 353.218 kb on + strandat 353.218 kb on + strandat 353.218 kb on + strandat 353.218 kb on + strandat 353.218 kb on + strandat 353.220 kb on + strandat 353.221 kb on - strandat 353.514 kb on + strandat 353.759 kb on + strand, within SM_b20346at 353.760 kb on - strand, within SM_b20346at 354.012 kb on - strand, within SM_b20346at 354.018 kb on + strand, within SM_b20346at 354.018 kb on + strand, within SM_b20346at 354.019 kb on - strand, within SM_b20346at 354.019 kb on - strand, within SM_b20346at 354.114 kb on + strand, within SM_b20346at 354.114 kb on + strand, within SM_b20346at 354.155 kb on + strand, within SM_b20346at 354.157 kb on + strand, within SM_b20346at 354.157 kb on + strand, within SM_b20346at 354.157 kb on + strand, within SM_b20346at 354.158 kb on - strand, within SM_b20346at 354.162 kb on + strand, within SM_b20346at 354.163 kb on - strand, within SM_b20346at 354.413 kb on + strand, within SM_b20346at 354.414 kb on - strand, within SM_b20346at 354.414 kb on - strand, within SM_b20346

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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349,521 + SM_b20344 0.28 +0.4
349,583 - SM_b20344 0.34 +0.0
349,583 - SM_b20344 0.34 -1.1
349,583 - SM_b20344 0.34 -0.1
349,689 + SM_b20344 0.45 -0.3
349,822 + SM_b20344 0.59 +0.3
349,822 + SM_b20344 0.59 -0.5
349,822 + SM_b20344 0.59 +2.0
349,822 + SM_b20344 0.59 -0.4
349,823 - SM_b20344 0.59 +0.1
349,887 - SM_b20344 0.66 -0.5
349,887 - SM_b20344 0.66 +1.0
349,887 - SM_b20344 0.66 -0.9
349,968 - SM_b20344 0.75 -0.1
350,037 - SM_b20344 0.82 +0.2
350,037 - SM_b20344 0.82 +0.8
350,037 - SM_b20344 0.82 -0.5
350,037 - SM_b20344 0.82 -0.4
350,039 - SM_b20344 0.82 +0.8
350,039 - SM_b20344 0.82 -0.3
350,075 + SM_b20344 0.86 -0.2
350,238 + +0.1
350,243 - +0.1
350,408 + -0.1
350,598 - +1.2
350,598 - +1.2
350,959 - SM_b20345 0.19 +0.5
351,065 - SM_b20345 0.23 +0.1
351,065 - SM_b20345 0.23 -0.1
351,165 + SM_b20345 0.26 -0.1
351,558 - SM_b20345 0.38 +0.0
351,690 + SM_b20345 0.43 +0.8
351,690 + SM_b20345 0.43 +0.9
351,690 + SM_b20345 0.43 +0.8
351,690 + SM_b20345 0.43 +0.4
351,690 + SM_b20345 0.43 +0.0
351,691 - SM_b20345 0.43 +2.3
351,691 - SM_b20345 0.43 -1.5
351,691 - SM_b20345 0.43 +0.6
351,691 - SM_b20345 0.43 -0.5
351,949 - SM_b20345 0.51 +0.5
352,011 + SM_b20345 0.53 +2.2
352,032 + SM_b20345 0.53 +0.3
352,077 + SM_b20345 0.55 +0.6
352,077 + SM_b20345 0.55 +0.2
352,078 - SM_b20345 0.55 +1.0
352,078 - SM_b20345 0.55 -3.0
352,338 + SM_b20345 0.63 +0.2
352,338 + SM_b20345 0.63 +1.6
352,338 + SM_b20345 0.63 -0.1
352,339 - SM_b20345 0.63 -0.3
352,530 + SM_b20345 0.69 +0.6
352,557 + SM_b20345 0.70 -0.2
352,662 + SM_b20345 0.73 -0.4
352,663 - SM_b20345 0.73 +0.2
352,663 - SM_b20345 0.73 -0.1
352,684 + SM_b20345 0.74 +0.5
352,907 + SM_b20345 0.81 +0.9
352,907 + SM_b20345 0.81 +0.5
352,907 + SM_b20345 0.81 +1.5
352,907 + SM_b20345 0.81 +1.0
352,909 + SM_b20345 0.81 -0.2
352,910 - SM_b20345 0.81 +0.6
352,912 - SM_b20345 0.81 +0.2
352,912 - SM_b20345 0.81 -1.1
352,944 - SM_b20345 0.82 +1.1
352,944 - SM_b20345 0.82 -0.0
353,013 + SM_b20345 0.85 -0.1
353,143 - SM_b20345 0.89 +0.9
353,143 - SM_b20345 0.89 -0.4
353,218 + +0.0
353,218 + +0.0
353,218 + +0.3
353,218 + +0.5
353,218 + -0.3
353,220 + +0.4
353,221 - +1.4
353,514 + -0.2
353,759 + SM_b20346 0.20 -0.1
353,760 - SM_b20346 0.20 -1.1
354,012 - SM_b20346 0.42 +0.5
354,018 + SM_b20346 0.43 +0.1
354,018 + SM_b20346 0.43 +0.7
354,019 - SM_b20346 0.43 -1.0
354,019 - SM_b20346 0.43 -1.0
354,114 + SM_b20346 0.51 +0.3
354,114 + SM_b20346 0.51 +1.5
354,155 + SM_b20346 0.54 +1.0
354,157 + SM_b20346 0.55 +0.4
354,157 + SM_b20346 0.55 +0.5
354,157 + SM_b20346 0.55 -0.2
354,158 - SM_b20346 0.55 +0.7
354,162 + SM_b20346 0.55 +0.3
354,163 - SM_b20346 0.55 +0.3
354,413 + SM_b20346 0.77 +1.5
354,414 - SM_b20346 0.77 +0.6
354,414 - SM_b20346 0.77 +0.8

Or see this region's nucleotide sequence