Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20322 and SM_b20323 are separated by 87 nucleotides SM_b20323 and SM_b20324 are separated by 21 nucleotides SM_b20324 and SM_b20325 are separated by 478 nucleotides
SM_b20322: SM_b20322 - TRAP-type small permease component, at 325,229 to 325,834
_b20322
SM_b20323: SM_b20323 - transcriptional regulator, at 325,922 to 326,581
_b20323
SM_b20324: SM_b20324 - ThuR, regulatory protein for trehalosemaltose transport system, at 326,603 to 327,619
_b20324
SM_b20325: SM_b20325 - ABC transporter for D-trehalose/D-maltose/sucrose, substrate-binding component (ThuE) <small>(from data)</small>, at 328,098 to 329,369
_b20325
Position (kb) 326
327
328 Strain fitness (log2 ratio) -2
-1
0
1
2 at 325.651 kb on - strand, within SM_b20322 at 325.652 kb on + strand, within SM_b20322 at 325.652 kb on + strand, within SM_b20322 at 325.652 kb on + strand, within SM_b20322 at 325.911 kb on - strand at 326.409 kb on - strand, within SM_b20323 at 326.641 kb on + strand at 326.642 kb on - strand at 326.642 kb on - strand at 326.642 kb on - strand at 326.787 kb on + strand, within SM_b20324 at 326.787 kb on + strand, within SM_b20324 at 326.787 kb on + strand, within SM_b20324 at 326.807 kb on + strand, within SM_b20324 at 327.092 kb on - strand, within SM_b20324 at 327.105 kb on - strand, within SM_b20324 at 327.105 kb on - strand, within SM_b20324 at 327.105 kb on - strand, within SM_b20324 at 327.301 kb on - strand, within SM_b20324 at 327.301 kb on - strand, within SM_b20324 at 327.323 kb on - strand, within SM_b20324 at 327.324 kb on - strand, within SM_b20324 at 327.570 kb on - strand at 327.646 kb on - strand at 327.756 kb on + strand at 327.756 kb on + strand at 328.118 kb on - strand at 328.118 kb on - strand at 328.118 kb on - strand at 328.185 kb on - strand at 328.500 kb on + strand, within SM_b20325 at 328.500 kb on + strand, within SM_b20325 at 328.501 kb on - strand, within SM_b20325 at 328.501 kb on - strand, within SM_b20325 at 328.549 kb on - strand, within SM_b20325 at 328.549 kb on - strand, within SM_b20325 at 328.549 kb on - strand, within SM_b20325
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 325,651 - SM_b20322 0.70 -2.6 325,652 + SM_b20322 0.70 +0.8 325,652 + SM_b20322 0.70 -0.8 325,652 + SM_b20322 0.70 +0.5 325,911 - -0.0 326,409 - SM_b20323 0.74 -0.4 326,641 + -0.1 326,642 - -0.8 326,642 - -1.6 326,642 - -1.4 326,787 + SM_b20324 0.18 -0.7 326,787 + SM_b20324 0.18 -0.5 326,787 + SM_b20324 0.18 -1.1 326,807 + SM_b20324 0.20 -0.9 327,092 - SM_b20324 0.48 -1.8 327,105 - SM_b20324 0.49 -0.7 327,105 - SM_b20324 0.49 -0.8 327,105 - SM_b20324 0.49 -0.9 327,301 - SM_b20324 0.69 +0.1 327,301 - SM_b20324 0.69 -0.3 327,323 - SM_b20324 0.71 +0.0 327,324 - SM_b20324 0.71 -1.6 327,570 - -0.8 327,646 - +2.6 327,756 + -0.5 327,756 + -0.5 328,118 - +0.3 328,118 - +1.0 328,118 - -0.7 328,185 - -0.5 328,500 + SM_b20325 0.32 -0.4 328,500 + SM_b20325 0.32 -0.2 328,501 - SM_b20325 0.32 +1.0 328,501 - SM_b20325 0.32 +0.1 328,549 - SM_b20325 0.35 +0.1 328,549 - SM_b20325 0.35 -0.4 328,549 - SM_b20325 0.35 -0.5
Or see this region's nucleotide sequence