Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20314 and SM_b20315 are separated by 390 nucleotides SM_b20315 and SM_b20316 are separated by 79 nucleotides
SM_b20314: SM_b20314 - glycerone kinase, at 315,380 to 316,372
_b20314
SM_b20315: SM_b20315 - sugar ABC transporter permease, at 316,763 to 317,749
_b20315
SM_b20316: SM_b20316 - sugar ABC transporter substrate-binding protein, at 317,829 to 318,830
_b20316
Position (kb) 316
317
318 Strain fitness (log2 ratio) -1
0
1
2 at 316.054 kb on - strand, within SM_b20314 at 316.054 kb on - strand, within SM_b20314 at 316.431 kb on + strand at 316.540 kb on + strand at 316.541 kb on - strand at 316.998 kb on + strand, within SM_b20315 at 317.229 kb on - strand, within SM_b20315 at 317.429 kb on + strand, within SM_b20315 at 317.429 kb on + strand, within SM_b20315 at 317.429 kb on + strand, within SM_b20315 at 317.430 kb on - strand, within SM_b20315 at 317.432 kb on - strand, within SM_b20315 at 317.505 kb on - strand, within SM_b20315 at 317.516 kb on + strand, within SM_b20315 at 317.516 kb on + strand, within SM_b20315 at 317.516 kb on + strand, within SM_b20315 at 317.557 kb on - strand, within SM_b20315 at 317.573 kb on + strand, within SM_b20315 at 317.729 kb on + strand at 317.730 kb on - strand at 317.815 kb on - strand at 317.838 kb on + strand at 317.839 kb on - strand at 317.986 kb on - strand, within SM_b20316 at 318.212 kb on + strand, within SM_b20316 at 318.430 kb on - strand, within SM_b20316 at 318.591 kb on + strand, within SM_b20316 at 318.610 kb on + strand, within SM_b20316 at 318.649 kb on - strand, within SM_b20316 at 318.691 kb on - strand, within SM_b20316 at 318.727 kb on - strand, within SM_b20316
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 316,054 - SM_b20314 0.68 -0.3 316,054 - SM_b20314 0.68 +0.4 316,431 + -1.7 316,540 + +0.3 316,541 - -0.4 316,998 + SM_b20315 0.24 +0.1 317,229 - SM_b20315 0.47 +0.2 317,429 + SM_b20315 0.67 -0.3 317,429 + SM_b20315 0.67 -0.4 317,429 + SM_b20315 0.67 +0.8 317,430 - SM_b20315 0.68 +0.1 317,432 - SM_b20315 0.68 +0.2 317,505 - SM_b20315 0.75 +0.4 317,516 + SM_b20315 0.76 -0.4 317,516 + SM_b20315 0.76 -0.2 317,516 + SM_b20315 0.76 +2.6 317,557 - SM_b20315 0.80 -0.9 317,573 + SM_b20315 0.82 -0.0 317,729 + +0.2 317,730 - -0.3 317,815 - -0.0 317,838 + +0.1 317,839 - -1.0 317,986 - SM_b20316 0.16 -1.3 318,212 + SM_b20316 0.38 +0.7 318,430 - SM_b20316 0.60 -0.4 318,591 + SM_b20316 0.76 +0.3 318,610 + SM_b20316 0.78 -0.4 318,649 - SM_b20316 0.82 -0.0 318,691 - SM_b20316 0.86 -0.4 318,727 - SM_b20316 0.90 -0.5
Or see this region's nucleotide sequence