Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20242 and SM_b20243 are separated by 4 nucleotides SM_b20243 and SM_b20244 overlap by 4 nucleotides
SM_b20242: SM_b20242 - hypothetical protein, at 246,457 to 247,587
_b20242
SM_b20243: SM_b20243 - glycosyltransferase, at 247,592 to 248,743
_b20243
SM_b20244: SM_b20244 - CDP-tyvelose-2-epimerase, at 248,740 to 249,861
_b20244
Position (kb) 247
248
249 Strain fitness (log2 ratio) -2
-1
0
1
2 at 246.792 kb on - strand, within SM_b20242 at 246.873 kb on - strand, within SM_b20242 at 247.074 kb on + strand, within SM_b20242 at 247.095 kb on + strand, within SM_b20242 at 247.095 kb on + strand, within SM_b20242 at 247.096 kb on - strand, within SM_b20242 at 247.127 kb on + strand, within SM_b20242 at 247.128 kb on - strand, within SM_b20242 at 247.128 kb on - strand, within SM_b20242 at 247.170 kb on - strand, within SM_b20242 at 247.367 kb on + strand, within SM_b20242 at 247.367 kb on + strand, within SM_b20242 at 247.368 kb on - strand, within SM_b20242 at 247.432 kb on + strand, within SM_b20242 at 247.572 kb on - strand at 247.819 kb on - strand, within SM_b20243 at 247.894 kb on - strand, within SM_b20243 at 248.042 kb on + strand, within SM_b20243 at 248.043 kb on - strand, within SM_b20243 at 248.043 kb on - strand, within SM_b20243 at 248.043 kb on - strand, within SM_b20243 at 248.158 kb on + strand, within SM_b20243 at 248.161 kb on - strand, within SM_b20243 at 248.161 kb on - strand, within SM_b20243 at 248.191 kb on - strand, within SM_b20243 at 248.194 kb on + strand, within SM_b20243 at 248.627 kb on - strand, within SM_b20243 at 248.627 kb on - strand, within SM_b20243 at 248.627 kb on - strand, within SM_b20243 at 248.632 kb on - strand at 248.632 kb on - strand at 248.811 kb on - strand at 248.880 kb on + strand, within SM_b20244 at 249.119 kb on + strand, within SM_b20244 at 249.120 kb on - strand, within SM_b20244 at 249.120 kb on - strand, within SM_b20244 at 249.120 kb on - strand, within SM_b20244 at 249.207 kb on - strand, within SM_b20244 at 249.262 kb on + strand, within SM_b20244 at 249.263 kb on - strand, within SM_b20244 at 249.269 kb on + strand, within SM_b20244 at 249.270 kb on - strand, within SM_b20244 at 249.270 kb on - strand, within SM_b20244 at 249.270 kb on - strand, within SM_b20244 at 249.270 kb on - strand, within SM_b20244 at 249.300 kb on - strand, within SM_b20244 at 249.306 kb on + strand, within SM_b20244 at 249.371 kb on + strand, within SM_b20244 at 249.416 kb on + strand, within SM_b20244 at 249.416 kb on + strand, within SM_b20244
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 246,792 - SM_b20242 0.30 +2.6 246,873 - SM_b20242 0.37 -0.3 247,074 + SM_b20242 0.55 -1.9 247,095 + SM_b20242 0.56 +1.4 247,095 + SM_b20242 0.56 -1.9 247,096 - SM_b20242 0.56 -0.3 247,127 + SM_b20242 0.59 -0.8 247,128 - SM_b20242 0.59 -1.2 247,128 - SM_b20242 0.59 -0.2 247,170 - SM_b20242 0.63 -2.2 247,367 + SM_b20242 0.80 +0.5 247,367 + SM_b20242 0.80 +0.3 247,368 - SM_b20242 0.81 -0.5 247,432 + SM_b20242 0.86 -1.2 247,572 - +0.3 247,819 - SM_b20243 0.20 +0.4 247,894 - SM_b20243 0.26 -0.0 248,042 + SM_b20243 0.39 -1.4 248,043 - SM_b20243 0.39 +0.3 248,043 - SM_b20243 0.39 +0.8 248,043 - SM_b20243 0.39 +0.9 248,158 + SM_b20243 0.49 -0.0 248,161 - SM_b20243 0.49 +1.1 248,161 - SM_b20243 0.49 -0.1 248,191 - SM_b20243 0.52 -0.0 248,194 + SM_b20243 0.52 +0.3 248,627 - SM_b20243 0.90 +0.4 248,627 - SM_b20243 0.90 -0.3 248,627 - SM_b20243 0.90 +0.3 248,632 - +1.1 248,632 - +0.3 248,811 - -0.7 248,880 + SM_b20244 0.12 -0.2 249,119 + SM_b20244 0.34 +0.9 249,120 - SM_b20244 0.34 +0.3 249,120 - SM_b20244 0.34 -0.2 249,120 - SM_b20244 0.34 +0.8 249,207 - SM_b20244 0.42 -0.7 249,262 + SM_b20244 0.47 -0.3 249,263 - SM_b20244 0.47 +0.1 249,269 + SM_b20244 0.47 +2.1 249,270 - SM_b20244 0.47 +0.1 249,270 - SM_b20244 0.47 -1.1 249,270 - SM_b20244 0.47 +2.1 249,270 - SM_b20244 0.47 -1.3 249,300 - SM_b20244 0.50 -0.6 249,306 + SM_b20244 0.50 +0.1 249,371 + SM_b20244 0.56 -1.9 249,416 + SM_b20244 0.60 +1.1 249,416 + SM_b20244 0.60 -1.8
Or see this region's nucleotide sequence