Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20239 and SM_b20240 are separated by 19 nucleotides SM_b20240 and SM_b20241 overlap by 4 nucleotides
SM_b20239: SM_b20239 - dTDP-glucose 4,6-dehydratase, at 243,200 to 244,240
_b20239
SM_b20240: SM_b20240 - hypothetical protein, at 244,260 to 245,378
_b20240
SM_b20241: SM_b20241 - hypothetical protein, at 245,375 to 246,460
_b20241
Position (kb) 244
245
246 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 243.304 kb on + strand, within SM_b20239 at 243.567 kb on + strand, within SM_b20239 at 243.567 kb on + strand, within SM_b20239 at 243.567 kb on + strand, within SM_b20239 at 243.567 kb on + strand, within SM_b20239 at 243.568 kb on - strand, within SM_b20239 at 243.684 kb on + strand, within SM_b20239 at 243.684 kb on + strand, within SM_b20239 at 243.685 kb on - strand, within SM_b20239 at 243.777 kb on + strand, within SM_b20239 at 243.816 kb on + strand, within SM_b20239 at 243.816 kb on + strand, within SM_b20239 at 243.817 kb on - strand, within SM_b20239 at 243.817 kb on - strand, within SM_b20239 at 243.817 kb on - strand, within SM_b20239 at 243.853 kb on - strand, within SM_b20239 at 244.065 kb on + strand, within SM_b20239 at 244.113 kb on + strand, within SM_b20239 at 244.113 kb on + strand, within SM_b20239 at 244.113 kb on + strand, within SM_b20239 at 244.114 kb on - strand, within SM_b20239 at 244.114 kb on - strand, within SM_b20239 at 244.148 kb on + strand at 244.148 kb on + strand at 244.159 kb on + strand at 244.159 kb on + strand at 244.160 kb on - strand at 244.160 kb on - strand at 244.234 kb on + strand at 244.234 kb on + strand at 244.261 kb on + strand at 244.384 kb on + strand, within SM_b20240 at 244.873 kb on + strand, within SM_b20240 at 245.039 kb on - strand, within SM_b20240 at 245.104 kb on + strand, within SM_b20240 at 245.104 kb on + strand, within SM_b20240 at 245.105 kb on - strand, within SM_b20240 at 245.105 kb on - strand, within SM_b20240 at 245.179 kb on + strand, within SM_b20240 at 245.180 kb on - strand, within SM_b20240 at 245.442 kb on + strand at 245.442 kb on + strand at 245.443 kb on - strand at 245.443 kb on - strand at 245.443 kb on - strand at 245.443 kb on - strand at 245.443 kb on - strand at 245.443 kb on - strand at 245.446 kb on + strand at 245.447 kb on - strand at 245.447 kb on - strand at 245.447 kb on - strand at 245.447 kb on - strand at 245.599 kb on - strand at 245.754 kb on + strand, within SM_b20241 at 245.755 kb on - strand, within SM_b20241 at 245.961 kb on + strand, within SM_b20241 at 245.961 kb on + strand, within SM_b20241 at 245.961 kb on + strand, within SM_b20241 at 245.962 kb on - strand, within SM_b20241 at 245.997 kb on + strand, within SM_b20241 at 246.274 kb on - strand, within SM_b20241 at 246.274 kb on - strand, within SM_b20241 at 246.345 kb on + strand, within SM_b20241 at 246.346 kb on - strand, within SM_b20241
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 243,304 + SM_b20239 0.10 -0.1 243,567 + SM_b20239 0.35 -0.3 243,567 + SM_b20239 0.35 +0.6 243,567 + SM_b20239 0.35 -0.7 243,567 + SM_b20239 0.35 +0.4 243,568 - SM_b20239 0.35 -0.7 243,684 + SM_b20239 0.46 -0.6 243,684 + SM_b20239 0.46 +4.3 243,685 - SM_b20239 0.47 +1.6 243,777 + SM_b20239 0.55 -0.4 243,816 + SM_b20239 0.59 +1.4 243,816 + SM_b20239 0.59 -0.5 243,817 - SM_b20239 0.59 +1.4 243,817 - SM_b20239 0.59 -0.4 243,817 - SM_b20239 0.59 +0.2 243,853 - SM_b20239 0.63 +0.2 244,065 + SM_b20239 0.83 -0.5 244,113 + SM_b20239 0.88 -0.9 244,113 + SM_b20239 0.88 +3.4 244,113 + SM_b20239 0.88 -0.4 244,114 - SM_b20239 0.88 +0.8 244,114 - SM_b20239 0.88 -0.0 244,148 + -0.1 244,148 + +0.4 244,159 + +1.1 244,159 + +0.7 244,160 - -1.2 244,160 - -0.5 244,234 + +0.6 244,234 + +0.1 244,261 + +1.0 244,384 + SM_b20240 0.11 +1.4 244,873 + SM_b20240 0.55 -0.0 245,039 - SM_b20240 0.70 -0.1 245,104 + SM_b20240 0.75 -0.3 245,104 + SM_b20240 0.75 -0.9 245,105 - SM_b20240 0.76 +0.5 245,105 - SM_b20240 0.76 +0.3 245,179 + SM_b20240 0.82 -0.7 245,180 - SM_b20240 0.82 -0.2 245,442 + +0.4 245,442 + +1.8 245,443 - +0.6 245,443 - -0.1 245,443 - +1.9 245,443 - +0.2 245,443 - +0.2 245,443 - +1.2 245,446 + +0.6 245,447 - +0.9 245,447 - -0.5 245,447 - -0.3 245,447 - +0.1 245,599 - +0.6 245,754 + SM_b20241 0.35 -0.3 245,755 - SM_b20241 0.35 -1.1 245,961 + SM_b20241 0.54 +1.6 245,961 + SM_b20241 0.54 +0.2 245,961 + SM_b20241 0.54 -0.7 245,962 - SM_b20241 0.54 +1.1 245,997 + SM_b20241 0.57 -0.5 246,274 - SM_b20241 0.83 +0.5 246,274 - SM_b20241 0.83 -0.4 246,345 + SM_b20241 0.89 +0.3 246,346 - SM_b20241 0.89 -0.2
Or see this region's nucleotide sequence