Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20199

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20198 and SM_b20199 are separated by 32 nucleotidesSM_b20199 and SM_b20200 are separated by 2 nucleotides SM_b20198: SM_b20198 - ribulose bisophosphate carboxylase, at 205,767 to 207,227 _b20198 SM_b20199: SM_b20199 - fructose-1,6-bisphosphate aldolase, at 207,260 to 208,339 _b20199 SM_b20200: SM_b20200 - transketolase, at 208,342 to 210,426 _b20200 Position (kb) 207 208 209Strain fitness (log2 ratio) -2 -1 0 1 2 3at 206.318 kb on + strand, within SM_b20198at 206.320 kb on + strand, within SM_b20198at 206.321 kb on - strand, within SM_b20198at 206.503 kb on + strand, within SM_b20198at 206.503 kb on + strand, within SM_b20198at 206.504 kb on - strand, within SM_b20198at 206.560 kb on + strand, within SM_b20198at 206.561 kb on - strand, within SM_b20198at 206.566 kb on + strand, within SM_b20198at 206.567 kb on - strand, within SM_b20198at 206.665 kb on + strand, within SM_b20198at 206.666 kb on - strand, within SM_b20198at 206.666 kb on - strand, within SM_b20198at 206.666 kb on - strand, within SM_b20198at 206.666 kb on - strand, within SM_b20198at 206.788 kb on + strand, within SM_b20198at 206.920 kb on + strand, within SM_b20198at 206.929 kb on + strand, within SM_b20198at 206.930 kb on - strand, within SM_b20198at 207.133 kb on + strandat 207.133 kb on + strandat 207.133 kb on + strandat 207.227 kb on + strandat 207.227 kb on + strandat 207.227 kb on + strandat 207.230 kb on + strandat 207.548 kb on + strand, within SM_b20199at 207.549 kb on - strand, within SM_b20199at 207.549 kb on - strand, within SM_b20199at 207.549 kb on - strand, within SM_b20199at 207.731 kb on - strand, within SM_b20199at 207.739 kb on - strand, within SM_b20199at 207.957 kb on - strand, within SM_b20199at 207.979 kb on + strand, within SM_b20199at 207.979 kb on + strand, within SM_b20199at 207.981 kb on + strand, within SM_b20199at 207.982 kb on - strand, within SM_b20199at 208.122 kb on + strand, within SM_b20199at 208.287 kb on + strandat 208.400 kb on - strandat 208.621 kb on - strand, within SM_b20200at 208.793 kb on + strand, within SM_b20200at 208.793 kb on + strand, within SM_b20200at 208.793 kb on + strand, within SM_b20200at 208.794 kb on - strand, within SM_b20200at 208.794 kb on - strand, within SM_b20200at 208.794 kb on - strand, within SM_b20200at 208.811 kb on - strand, within SM_b20200at 208.811 kb on - strand, within SM_b20200at 208.811 kb on - strand, within SM_b20200at 208.811 kb on - strand, within SM_b20200at 209.045 kb on + strand, within SM_b20200at 209.045 kb on + strand, within SM_b20200at 209.096 kb on + strand, within SM_b20200at 209.097 kb on - strand, within SM_b20200at 209.195 kb on + strand, within SM_b20200at 209.204 kb on + strand, within SM_b20200at 209.205 kb on - strand, within SM_b20200at 209.205 kb on - strand, within SM_b20200

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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206,318 + SM_b20198 0.38 -1.9
206,320 + SM_b20198 0.38 +2.8
206,321 - SM_b20198 0.38 -1.0
206,503 + SM_b20198 0.50 -0.1
206,503 + SM_b20198 0.50 -0.1
206,504 - SM_b20198 0.50 +0.7
206,560 + SM_b20198 0.54 -1.6
206,561 - SM_b20198 0.54 -1.1
206,566 + SM_b20198 0.55 -1.3
206,567 - SM_b20198 0.55 +0.1
206,665 + SM_b20198 0.61 +0.9
206,666 - SM_b20198 0.62 +1.2
206,666 - SM_b20198 0.62 -0.5
206,666 - SM_b20198 0.62 -0.7
206,666 - SM_b20198 0.62 -0.4
206,788 + SM_b20198 0.70 -0.3
206,920 + SM_b20198 0.79 -0.0
206,929 + SM_b20198 0.80 +1.3
206,930 - SM_b20198 0.80 +2.4
207,133 + +0.8
207,133 + -0.4
207,133 + -0.5
207,227 + -0.7
207,227 + +0.7
207,227 + -0.3
207,230 + +0.5
207,548 + SM_b20199 0.27 -0.1
207,549 - SM_b20199 0.27 -1.3
207,549 - SM_b20199 0.27 -0.8
207,549 - SM_b20199 0.27 -0.3
207,731 - SM_b20199 0.44 -0.3
207,739 - SM_b20199 0.44 -0.8
207,957 - SM_b20199 0.65 +0.1
207,979 + SM_b20199 0.67 +0.1
207,979 + SM_b20199 0.67 -0.4
207,981 + SM_b20199 0.67 -0.6
207,982 - SM_b20199 0.67 -0.7
208,122 + SM_b20199 0.80 +0.7
208,287 + -0.5
208,400 - -0.4
208,621 - SM_b20200 0.13 +0.5
208,793 + SM_b20200 0.22 -0.0
208,793 + SM_b20200 0.22 +0.3
208,793 + SM_b20200 0.22 -0.4
208,794 - SM_b20200 0.22 -0.3
208,794 - SM_b20200 0.22 +2.1
208,794 - SM_b20200 0.22 -0.8
208,811 - SM_b20200 0.22 -1.9
208,811 - SM_b20200 0.22 -0.2
208,811 - SM_b20200 0.22 +0.2
208,811 - SM_b20200 0.22 +0.5
209,045 + SM_b20200 0.34 -0.1
209,045 + SM_b20200 0.34 +0.4
209,096 + SM_b20200 0.36 +1.5
209,097 - SM_b20200 0.36 -0.3
209,195 + SM_b20200 0.41 -0.2
209,204 + SM_b20200 0.41 -1.8
209,205 - SM_b20200 0.41 -0.5
209,205 - SM_b20200 0.41 -0.5

Or see this region's nucleotide sequence