Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20143 and SM_b20144 are separated by 85 nucleotides SM_b20144 and SM_b20145 are separated by 314 nucleotides
SM_b20143: SM_b20143 - oligopeptide ABC transporter permease, at 157,386 to 158,300
_b20143
SM_b20144: SM_b20144 - ABC transporter oligopeptide-binding protein, at 158,386 to 159,891
_b20144
SM_b20145: SM_b20145 - hypothetical protein, at 160,206 to 161,393
_b20145
Position (kb) 158
159
160 Strain fitness (log2 ratio) -1
0
1
2
3 at 157.417 kb on + strand at 157.417 kb on + strand at 157.551 kb on - strand, within SM_b20143 at 158.232 kb on + strand at 158.232 kb on + strand at 158.233 kb on - strand at 158.522 kb on + strand at 158.522 kb on + strand at 158.639 kb on + strand, within SM_b20144 at 158.735 kb on + strand, within SM_b20144 at 158.735 kb on + strand, within SM_b20144 at 158.736 kb on - strand, within SM_b20144 at 158.738 kb on + strand, within SM_b20144 at 158.739 kb on - strand, within SM_b20144 at 158.879 kb on - strand, within SM_b20144 at 158.936 kb on + strand, within SM_b20144 at 159.096 kb on + strand, within SM_b20144 at 159.116 kb on + strand, within SM_b20144 at 159.117 kb on - strand, within SM_b20144 at 159.138 kb on - strand, within SM_b20144 at 159.344 kb on + strand, within SM_b20144 at 159.345 kb on - strand, within SM_b20144 at 159.345 kb on - strand, within SM_b20144 at 159.460 kb on + strand, within SM_b20144 at 159.509 kb on + strand, within SM_b20144 at 159.561 kb on - strand, within SM_b20144 at 159.954 kb on + strand at 159.954 kb on + strand at 159.955 kb on - strand at 159.955 kb on - strand at 160.627 kb on - strand, within SM_b20145 at 160.652 kb on + strand, within SM_b20145 at 160.652 kb on + strand, within SM_b20145
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 157,417 + +0.2 157,417 + +1.5 157,551 - SM_b20143 0.18 -0.8 158,232 + -1.2 158,232 + +0.7 158,233 - +0.6 158,522 + +0.6 158,522 + -0.4 158,639 + SM_b20144 0.17 -0.7 158,735 + SM_b20144 0.23 +0.4 158,735 + SM_b20144 0.23 +0.2 158,736 - SM_b20144 0.23 +0.8 158,738 + SM_b20144 0.23 +0.1 158,739 - SM_b20144 0.23 -0.6 158,879 - SM_b20144 0.33 +0.9 158,936 + SM_b20144 0.37 -0.7 159,096 + SM_b20144 0.47 -0.9 159,116 + SM_b20144 0.48 -0.9 159,117 - SM_b20144 0.49 +0.1 159,138 - SM_b20144 0.50 +2.8 159,344 + SM_b20144 0.64 +0.6 159,345 - SM_b20144 0.64 -0.1 159,345 - SM_b20144 0.64 +1.0 159,460 + SM_b20144 0.71 +0.1 159,509 + SM_b20144 0.75 -0.2 159,561 - SM_b20144 0.78 -0.9 159,954 + -0.8 159,954 + +0.4 159,955 - -0.3 159,955 - +0.6 160,627 - SM_b20145 0.35 +1.1 160,652 + SM_b20145 0.38 -0.2 160,652 + SM_b20145 0.38 -0.5
Or see this region's nucleotide sequence