Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20139 and SM_b20140 are separated by 19 nucleotides SM_b20140 and SM_b20141 overlap by 1 nucleotides SM_b20141 and SM_b20142 overlap by 8 nucleotides SM_b20142 and SM_b20143 are separated by 14 nucleotides
SM_b20139: SM_b20139 - hypothetical protein, at 153,414 to 153,908
_b20139
SM_b20140: SM_b20140 - dihydrodipicolinate synthase, at 153,928 to 154,809
_b20140
SM_b20141: SM_b20141 - oligopeptide ABC transporter ATP-binding protein, at 154,809 to 156,455
_b20141
SM_b20142: SM_b20142 - oligopeptide ABC transporter permease, at 156,448 to 157,371
_b20142
SM_b20143: SM_b20143 - oligopeptide ABC transporter permease, at 157,386 to 158,300
_b20143
Position (kb) 154
155
156
157 Strain fitness (log2 ratio) -1
0
1 at 153.887 kb on + strand at 154.100 kb on + strand, within SM_b20140 at 154.101 kb on - strand, within SM_b20140 at 154.256 kb on + strand, within SM_b20140 at 154.296 kb on - strand, within SM_b20140 at 154.344 kb on + strand, within SM_b20140 at 154.415 kb on + strand, within SM_b20140 at 154.415 kb on + strand, within SM_b20140 at 154.415 kb on + strand, within SM_b20140 at 154.416 kb on - strand, within SM_b20140 at 154.421 kb on + strand, within SM_b20140 at 154.422 kb on - strand, within SM_b20140 at 154.422 kb on - strand, within SM_b20140 at 154.422 kb on - strand, within SM_b20140 at 154.698 kb on + strand, within SM_b20140 at 154.698 kb on + strand, within SM_b20140 at 154.699 kb on - strand, within SM_b20140 at 154.699 kb on - strand, within SM_b20140 at 154.699 kb on - strand, within SM_b20140 at 154.749 kb on - strand at 154.863 kb on + strand at 154.864 kb on - strand at 154.922 kb on + strand at 154.923 kb on - strand at 154.925 kb on - strand at 154.940 kb on + strand at 155.002 kb on + strand, within SM_b20141 at 155.341 kb on + strand, within SM_b20141 at 155.413 kb on + strand, within SM_b20141 at 155.413 kb on + strand, within SM_b20141 at 155.414 kb on - strand, within SM_b20141 at 155.603 kb on - strand, within SM_b20141 at 155.704 kb on + strand, within SM_b20141 at 155.705 kb on - strand, within SM_b20141 at 155.726 kb on - strand, within SM_b20141 at 156.254 kb on + strand, within SM_b20141 at 156.367 kb on + strand at 156.367 kb on + strand at 156.367 kb on + strand at 156.368 kb on - strand at 156.599 kb on + strand, within SM_b20142 at 156.599 kb on + strand, within SM_b20142 at 156.599 kb on + strand, within SM_b20142 at 156.695 kb on + strand, within SM_b20142 at 156.695 kb on + strand, within SM_b20142 at 156.917 kb on + strand, within SM_b20142 at 156.917 kb on + strand, within SM_b20142 at 156.922 kb on + strand, within SM_b20142 at 156.922 kb on + strand, within SM_b20142 at 156.922 kb on + strand, within SM_b20142 at 156.923 kb on - strand, within SM_b20142 at 157.243 kb on + strand, within SM_b20142 at 157.244 kb on - strand, within SM_b20142 at 157.244 kb on - strand, within SM_b20142 at 157.244 kb on - strand, within SM_b20142 at 157.417 kb on + strand at 157.417 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 153,887 + -0.0 154,100 + SM_b20140 0.20 -0.4 154,101 - SM_b20140 0.20 -0.0 154,256 + SM_b20140 0.37 +0.1 154,296 - SM_b20140 0.42 +0.6 154,344 + SM_b20140 0.47 -0.0 154,415 + SM_b20140 0.55 +0.4 154,415 + SM_b20140 0.55 +0.5 154,415 + SM_b20140 0.55 -0.3 154,416 - SM_b20140 0.55 +0.2 154,421 + SM_b20140 0.56 -0.2 154,422 - SM_b20140 0.56 -0.1 154,422 - SM_b20140 0.56 +1.1 154,422 - SM_b20140 0.56 +0.1 154,698 + SM_b20140 0.87 +0.4 154,698 + SM_b20140 0.87 +0.7 154,699 - SM_b20140 0.87 -0.9 154,699 - SM_b20140 0.87 +0.2 154,699 - SM_b20140 0.87 -0.4 154,749 - +0.1 154,863 + -0.4 154,864 - -0.2 154,922 + +0.3 154,923 - -0.5 154,925 - +0.5 154,940 + -0.7 155,002 + SM_b20141 0.12 -0.1 155,341 + SM_b20141 0.32 -0.1 155,413 + SM_b20141 0.37 -0.2 155,413 + SM_b20141 0.37 -0.6 155,414 - SM_b20141 0.37 -0.8 155,603 - SM_b20141 0.48 -0.6 155,704 + SM_b20141 0.54 -0.3 155,705 - SM_b20141 0.54 -0.1 155,726 - SM_b20141 0.56 +0.6 156,254 + SM_b20141 0.88 -1.0 156,367 + -1.0 156,367 + +0.7 156,367 + -0.1 156,368 - +0.0 156,599 + SM_b20142 0.16 -1.4 156,599 + SM_b20142 0.16 -1.7 156,599 + SM_b20142 0.16 -0.0 156,695 + SM_b20142 0.27 +0.7 156,695 + SM_b20142 0.27 -0.4 156,917 + SM_b20142 0.51 +1.0 156,917 + SM_b20142 0.51 +0.6 156,922 + SM_b20142 0.51 -0.1 156,922 + SM_b20142 0.51 -0.7 156,922 + SM_b20142 0.51 -0.1 156,923 - SM_b20142 0.51 +0.2 157,243 + SM_b20142 0.86 +0.5 157,244 - SM_b20142 0.86 -0.7 157,244 - SM_b20142 0.86 -0.3 157,244 - SM_b20142 0.86 +0.0 157,417 + +0.2 157,417 + +1.5
Or see this region's nucleotide sequence