Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20134 and SM_b20135 are separated by 78 nucleotides SM_b20135 and SM_b20136 are separated by 30 nucleotides
SM_b20134: SM_b20134 - permease, at 147,547 to 148,938
_b20134
SM_b20135: SM_b20135 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 149,017 to 149,649
_b20135
SM_b20136: SM_b20136 - hypothetical protein, at 149,680 to 151,053
_b20136
Position (kb) 149
150 Strain fitness (log2 ratio) -1
0
1 at 148.237 kb on - strand, within SM_b20134 at 148.277 kb on - strand, within SM_b20134 at 148.277 kb on - strand, within SM_b20134 at 148.444 kb on + strand at 148.445 kb on - strand, within SM_b20134 at 148.562 kb on + strand, within SM_b20134 at 148.847 kb on + strand at 148.848 kb on - strand at 148.848 kb on - strand at 148.912 kb on - strand at 148.933 kb on - strand at 149.174 kb on + strand, within SM_b20135 at 149.174 kb on + strand, within SM_b20135 at 149.174 kb on + strand, within SM_b20135 at 149.302 kb on + strand, within SM_b20135 at 149.336 kb on - strand, within SM_b20135 at 149.582 kb on + strand, within SM_b20135 at 149.583 kb on - strand, within SM_b20135 at 149.583 kb on - strand, within SM_b20135 at 149.583 kb on - strand, within SM_b20135 at 149.583 kb on - strand, within SM_b20135 at 149.584 kb on + strand, within SM_b20135 at 149.672 kb on + strand at 149.681 kb on + strand at 149.681 kb on + strand at 149.682 kb on - strand at 149.682 kb on - strand at 149.961 kb on - strand, within SM_b20136 at 150.032 kb on + strand, within SM_b20136 at 150.032 kb on + strand, within SM_b20136 at 150.032 kb on + strand, within SM_b20136 at 150.033 kb on - strand, within SM_b20136 at 150.129 kb on + strand, within SM_b20136 at 150.249 kb on - strand, within SM_b20136 at 150.327 kb on - strand, within SM_b20136 at 150.361 kb on + strand, within SM_b20136 at 150.361 kb on + strand, within SM_b20136 at 150.362 kb on - strand, within SM_b20136 at 150.590 kb on + strand, within SM_b20136 at 150.634 kb on + strand, within SM_b20136 at 150.634 kb on + strand, within SM_b20136 at 150.635 kb on - strand, within SM_b20136
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 148,237 - SM_b20134 0.50 -0.3 148,277 - SM_b20134 0.52 +0.1 148,277 - SM_b20134 0.52 -0.9 148,444 + +1.4 148,445 - SM_b20134 0.65 +0.0 148,562 + SM_b20134 0.73 +1.1 148,847 + -0.6 148,848 - -0.2 148,848 - +0.4 148,912 - +0.3 148,933 - +0.3 149,174 + SM_b20135 0.25 +0.1 149,174 + SM_b20135 0.25 -1.0 149,174 + SM_b20135 0.25 -0.9 149,302 + SM_b20135 0.45 -1.1 149,336 - SM_b20135 0.50 -0.8 149,582 + SM_b20135 0.89 -0.6 149,583 - SM_b20135 0.89 -0.2 149,583 - SM_b20135 0.89 -0.5 149,583 - SM_b20135 0.89 -0.9 149,583 - SM_b20135 0.89 +0.8 149,584 + SM_b20135 0.90 +0.1 149,672 + +0.3 149,681 + -0.1 149,681 + -0.4 149,682 - -0.5 149,682 - -0.1 149,961 - SM_b20136 0.20 -0.7 150,032 + SM_b20136 0.26 -0.6 150,032 + SM_b20136 0.26 -1.4 150,032 + SM_b20136 0.26 -0.0 150,033 - SM_b20136 0.26 +0.6 150,129 + SM_b20136 0.33 -0.6 150,249 - SM_b20136 0.41 -0.0 150,327 - SM_b20136 0.47 -0.3 150,361 + SM_b20136 0.50 +0.2 150,361 + SM_b20136 0.50 -0.2 150,362 - SM_b20136 0.50 +1.1 150,590 + SM_b20136 0.66 -0.3 150,634 + SM_b20136 0.69 +0.6 150,634 + SM_b20136 0.69 +0.4 150,635 - SM_b20136 0.70 -0.2
Or see this region's nucleotide sequence