Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20132 and SM_b20133 overlap by 1 nucleotides SM_b20133 and SM_b20134 are separated by 202 nucleotides
SM_b20132: SM_b20132 - dehydrogenase, at 143,977 to 146,295
_b20132
SM_b20133: SM_b20133 - hypothetical protein, at 146,295 to 147,344
_b20133
SM_b20134: SM_b20134 - permease, at 147,547 to 148,938
_b20134
Position (kb) 146
147
148 Strain fitness (log2 ratio) -2
-1
0
1
2 at 145.476 kb on + strand, within SM_b20132 at 145.571 kb on + strand, within SM_b20132 at 145.813 kb on + strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.832 kb on - strand, within SM_b20132 at 146.005 kb on + strand, within SM_b20132 at 146.019 kb on + strand, within SM_b20132 at 146.056 kb on + strand, within SM_b20132 at 146.056 kb on + strand, within SM_b20132 at 146.056 kb on + strand, within SM_b20132 at 146.057 kb on - strand, within SM_b20132 at 146.200 kb on + strand at 146.201 kb on - strand at 146.386 kb on + strand at 146.386 kb on + strand at 146.387 kb on - strand at 146.387 kb on - strand at 146.487 kb on + strand, within SM_b20133 at 146.488 kb on - strand, within SM_b20133 at 146.947 kb on - strand, within SM_b20133 at 147.148 kb on + strand, within SM_b20133 at 147.149 kb on - strand, within SM_b20133 at 147.149 kb on - strand, within SM_b20133 at 147.151 kb on + strand, within SM_b20133 at 147.152 kb on - strand, within SM_b20133 at 147.152 kb on - strand, within SM_b20133 at 147.248 kb on + strand at 147.248 kb on + strand at 147.248 kb on + strand at 147.248 kb on + strand at 147.482 kb on + strand at 147.765 kb on - strand, within SM_b20134 at 147.866 kb on + strand, within SM_b20134 at 147.866 kb on + strand, within SM_b20134 at 147.867 kb on - strand, within SM_b20134 at 147.998 kb on + strand, within SM_b20134 at 147.998 kb on + strand, within SM_b20134 at 147.998 kb on + strand, within SM_b20134 at 147.999 kb on - strand, within SM_b20134 at 148.007 kb on + strand, within SM_b20134 at 148.007 kb on + strand, within SM_b20134 at 148.007 kb on + strand, within SM_b20134 at 148.007 kb on + strand, within SM_b20134 at 148.237 kb on - strand, within SM_b20134 at 148.277 kb on - strand, within SM_b20134 at 148.277 kb on - strand, within SM_b20134
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 145,476 + SM_b20132 0.65 +0.3 145,571 + SM_b20132 0.69 +0.3 145,813 + SM_b20132 0.79 -0.1 145,814 - SM_b20132 0.79 -0.4 145,814 - SM_b20132 0.79 -0.5 145,814 - SM_b20132 0.79 -0.6 145,814 - SM_b20132 0.79 +0.5 145,814 - SM_b20132 0.79 -0.5 145,814 - SM_b20132 0.79 -0.2 145,814 - SM_b20132 0.79 +0.5 145,814 - SM_b20132 0.79 -0.8 145,832 - SM_b20132 0.80 -1.0 146,005 + SM_b20132 0.87 -0.7 146,019 + SM_b20132 0.88 -0.6 146,056 + SM_b20132 0.90 -1.0 146,056 + SM_b20132 0.90 -0.2 146,056 + SM_b20132 0.90 +1.8 146,057 - SM_b20132 0.90 -1.7 146,200 + +0.2 146,201 - -0.8 146,386 + +0.2 146,386 + +0.4 146,387 - +0.1 146,387 - -0.5 146,487 + SM_b20133 0.18 -0.6 146,488 - SM_b20133 0.18 +0.3 146,947 - SM_b20133 0.62 -0.1 147,148 + SM_b20133 0.81 -1.7 147,149 - SM_b20133 0.81 -1.4 147,149 - SM_b20133 0.81 -0.7 147,151 + SM_b20133 0.82 +1.0 147,152 - SM_b20133 0.82 -0.2 147,152 - SM_b20133 0.82 -0.7 147,248 + +0.2 147,248 + -1.2 147,248 + -2.2 147,248 + +0.6 147,482 + -0.3 147,765 - SM_b20134 0.16 -0.6 147,866 + SM_b20134 0.23 -0.5 147,866 + SM_b20134 0.23 -0.3 147,867 - SM_b20134 0.23 -0.5 147,998 + SM_b20134 0.32 -0.1 147,998 + SM_b20134 0.32 -0.9 147,998 + SM_b20134 0.32 +2.7 147,999 - SM_b20134 0.32 +0.5 148,007 + SM_b20134 0.33 +1.0 148,007 + SM_b20134 0.33 +0.0 148,007 + SM_b20134 0.33 -0.1 148,007 + SM_b20134 0.33 +0.2 148,237 - SM_b20134 0.50 -0.3 148,277 - SM_b20134 0.52 +0.1 148,277 - SM_b20134 0.52 -0.9
Or see this region's nucleotide sequence