Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20126 and SM_b20127 are separated by 152 nucleotides SM_b20127 and SM_b20128 are separated by 55 nucleotides
SM_b20126: SM_b20126 - sugar ABC transporter permease, at 137,756 to 138,853
_b20126
SM_b20127: SM_b20127 - hypothetical protein, at 139,006 to 139,986
_b20127
SM_b20128: SM_b20128 - deaminase, at 140,042 to 141,355
_b20128
Position (kb)
139
140 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 138.147 kb on + strand, within SM_b20126 at 138.177 kb on + strand, within SM_b20126 at 138.177 kb on + strand, within SM_b20126 at 138.177 kb on + strand, within SM_b20126 at 138.177 kb on + strand, within SM_b20126 at 138.178 kb on - strand, within SM_b20126 at 138.325 kb on - strand, within SM_b20126 at 138.337 kb on + strand, within SM_b20126 at 138.348 kb on + strand, within SM_b20126 at 138.348 kb on + strand, within SM_b20126 at 138.348 kb on + strand, within SM_b20126 at 138.348 kb on + strand, within SM_b20126 at 138.349 kb on - strand, within SM_b20126 at 138.390 kb on + strand, within SM_b20126 at 138.465 kb on + strand, within SM_b20126 at 138.465 kb on + strand, within SM_b20126 at 138.531 kb on - strand, within SM_b20126 at 138.804 kb on + strand at 138.804 kb on + strand at 138.805 kb on - strand at 138.805 kb on - strand at 139.064 kb on + strand at 139.065 kb on - strand at 139.065 kb on - strand at 139.109 kb on + strand, within SM_b20127 at 139.110 kb on - strand, within SM_b20127 at 139.215 kb on - strand, within SM_b20127 at 139.226 kb on + strand, within SM_b20127 at 139.227 kb on - strand, within SM_b20127 at 139.263 kb on - strand, within SM_b20127 at 139.430 kb on + strand, within SM_b20127 at 139.430 kb on + strand, within SM_b20127 at 139.430 kb on + strand, within SM_b20127 at 139.431 kb on - strand, within SM_b20127 at 139.431 kb on - strand, within SM_b20127 at 139.431 kb on - strand, within SM_b20127 at 139.431 kb on - strand, within SM_b20127 at 139.431 kb on - strand, within SM_b20127 at 139.574 kb on + strand, within SM_b20127 at 139.625 kb on - strand, within SM_b20127 at 139.625 kb on - strand, within SM_b20127 at 139.626 kb on + strand, within SM_b20127 at 139.626 kb on + strand, within SM_b20127 at 139.626 kb on + strand at 139.627 kb on - strand, within SM_b20127 at 139.629 kb on - strand, within SM_b20127 at 139.629 kb on - strand, within SM_b20127 at 139.724 kb on + strand, within SM_b20127 at 139.725 kb on - strand, within SM_b20127 at 139.725 kb on - strand, within SM_b20127 at 139.725 kb on - strand, within SM_b20127 at 139.725 kb on - strand, within SM_b20127 at 139.790 kb on + strand, within SM_b20127 at 139.790 kb on + strand, within SM_b20127 at 139.790 kb on + strand, within SM_b20127 at 139.791 kb on - strand, within SM_b20127 at 139.843 kb on + strand, within SM_b20127 at 139.981 kb on - strand at 139.988 kb on - strand at 140.067 kb on - strand at 140.067 kb on - strand at 140.067 kb on - strand at 140.214 kb on + strand, within SM_b20128 at 140.262 kb on + strand, within SM_b20128 at 140.263 kb on - strand, within SM_b20128
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 138,147 + SM_b20126 0.36 -0.4 138,177 + SM_b20126 0.38 +0.1 138,177 + SM_b20126 0.38 +1.4 138,177 + SM_b20126 0.38 -1.4 138,177 + SM_b20126 0.38 +3.6 138,178 - SM_b20126 0.38 +0.6 138,325 - SM_b20126 0.52 +1.8 138,337 + SM_b20126 0.53 +1.3 138,348 + SM_b20126 0.54 +0.4 138,348 + SM_b20126 0.54 -1.3 138,348 + SM_b20126 0.54 -0.6 138,348 + SM_b20126 0.54 -0.9 138,349 - SM_b20126 0.54 +1.2 138,390 + SM_b20126 0.58 +0.1 138,465 + SM_b20126 0.65 +0.1 138,465 + SM_b20126 0.65 -0.3 138,531 - SM_b20126 0.71 -0.3 138,804 + +0.6 138,804 + -0.8 138,805 - -0.1 138,805 - -0.0 139,064 + +2.1 139,065 - -0.6 139,065 - +0.6 139,109 + SM_b20127 0.10 +0.1 139,110 - SM_b20127 0.11 -1.3 139,215 - SM_b20127 0.21 +0.3 139,226 + SM_b20127 0.22 +1.5 139,227 - SM_b20127 0.23 +0.1 139,263 - SM_b20127 0.26 -0.1 139,430 + SM_b20127 0.43 -0.4 139,430 + SM_b20127 0.43 -0.1 139,430 + SM_b20127 0.43 +0.4 139,431 - SM_b20127 0.43 -0.4 139,431 - SM_b20127 0.43 +2.2 139,431 - SM_b20127 0.43 +0.5 139,431 - SM_b20127 0.43 -0.4 139,431 - SM_b20127 0.43 -0.4 139,574 + SM_b20127 0.58 -0.6 139,625 - SM_b20127 0.63 +0.8 139,625 - SM_b20127 0.63 +0.8 139,626 + SM_b20127 0.63 -0.3 139,626 + SM_b20127 0.63 +0.8 139,626 + +3.4 139,627 - SM_b20127 0.63 +0.6 139,629 - SM_b20127 0.64 +1.7 139,629 - SM_b20127 0.64 -0.4 139,724 + SM_b20127 0.73 -0.5 139,725 - SM_b20127 0.73 +0.0 139,725 - SM_b20127 0.73 -0.7 139,725 - SM_b20127 0.73 +1.1 139,725 - SM_b20127 0.73 +0.7 139,790 + SM_b20127 0.80 +0.3 139,790 + SM_b20127 0.80 -0.6 139,790 + SM_b20127 0.80 +0.8 139,791 - SM_b20127 0.80 -0.3 139,843 + SM_b20127 0.85 +0.1 139,981 - +0.1 139,988 - -0.0 140,067 - +0.6 140,067 - -0.4 140,067 - +0.8 140,214 + SM_b20128 0.13 +0.2 140,262 + SM_b20128 0.17 -0.1 140,263 - SM_b20128 0.17 -2.1
Or see this region's nucleotide sequence