Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20111 and SM_b20112 overlap by 4 nucleotides SM_b20112 and SM_b20113 are separated by 36 nucleotides SM_b20113 and SM_b20114 are separated by 2 nucleotides SM_b20114 and SM_b20115 are separated by 26 nucleotides
SM_b20111: SM_b20111 - oligopeptide ABC transporter ATP-binding protein, at 122,148 to 123,788
_b20111
SM_b20112: SM_b20112 - hypothetical protein, at 123,785 to 124,672
_b20112
SM_b20113: SM_b20113 - dehydrogenase, at 124,709 to 125,641
_b20113
SM_b20114: SM_b20114 - hypothetical protein, at 125,644 to 126,369
_b20114
SM_b20115: SM_b20115 - dihydroxy-acid dehydratase, at 126,396 to 128,117
_b20115
Position (kb)
124
125
126 Strain fitness (log2 ratio)
-1
0
1
2 at 123.723 kb on + strand at 123.725 kb on + strand at 123.725 kb on + strand at 123.726 kb on - strand at 123.726 kb on - strand at 123.726 kb on - strand at 123.947 kb on + strand, within SM_b20112 at 123.947 kb on + strand, within SM_b20112 at 123.948 kb on - strand, within SM_b20112 at 124.086 kb on + strand, within SM_b20112 at 124.477 kb on - strand, within SM_b20112 at 124.477 kb on - strand, within SM_b20112 at 124.477 kb on - strand, within SM_b20112 at 124.671 kb on - strand at 124.960 kb on - strand, within SM_b20113 at 125.171 kb on - strand, within SM_b20113 at 125.171 kb on - strand, within SM_b20113 at 125.171 kb on - strand, within SM_b20113 at 125.412 kb on + strand, within SM_b20113 at 125.465 kb on - strand, within SM_b20113 at 125.558 kb on - strand at 125.646 kb on - strand at 125.709 kb on - strand at 126.197 kb on + strand, within SM_b20114 at 126.198 kb on - strand, within SM_b20114 at 126.198 kb on - strand, within SM_b20114 at 126.208 kb on - strand, within SM_b20114 at 126.319 kb on + strand at 126.319 kb on + strand at 126.359 kb on + strand at 126.359 kb on + strand at 126.359 kb on + strand at 126.359 kb on + strand at 126.360 kb on - strand at 126.360 kb on - strand at 126.360 kb on - strand at 126.503 kb on - strand at 126.515 kb on - strand at 126.558 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 123,723 + +1.8 123,725 + -0.1 123,725 + +0.1 123,726 - +1.4 123,726 - -1.4 123,726 - +1.7 123,947 + SM_b20112 0.18 -1.0 123,947 + SM_b20112 0.18 -0.1 123,948 - SM_b20112 0.18 -0.8 124,086 + SM_b20112 0.34 +0.0 124,477 - SM_b20112 0.78 -0.7 124,477 - SM_b20112 0.78 +0.5 124,477 - SM_b20112 0.78 +0.4 124,671 - +0.1 124,960 - SM_b20113 0.27 +0.2 125,171 - SM_b20113 0.50 +1.3 125,171 - SM_b20113 0.50 -0.3 125,171 - SM_b20113 0.50 -0.0 125,412 + SM_b20113 0.75 -0.2 125,465 - SM_b20113 0.81 -0.4 125,558 - -0.4 125,646 - -0.2 125,709 - +0.3 126,197 + SM_b20114 0.76 +0.6 126,198 - SM_b20114 0.76 -0.1 126,198 - SM_b20114 0.76 -0.6 126,208 - SM_b20114 0.78 -0.6 126,319 + -0.5 126,319 + +0.2 126,359 + +0.3 126,359 + +1.4 126,359 + -0.5 126,359 + -1.1 126,360 - -0.4 126,360 - +0.6 126,360 - +0.4 126,503 - +0.5 126,515 - +0.4 126,558 + +1.2
Or see this region's nucleotide sequence