Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20099 and SM_b20100 are separated by 1 nucleotides SM_b20100 and SM_b20101 are separated by 60 nucleotides
SM_b20099: SM_b20099 - maltose alpha-D-glucosyltransferase, at 107,125 to 108,759
_b20099
SM_b20100: SM_b20100 - dehydrogenase, at 108,761 to 109,747
_b20100
SM_b20101: SM_b20101 - hydroxyglutarate oxidase, at 109,808 to 111,088
_b20101
Position (kb)
108
109
110 Strain fitness (log2 ratio)
-1
0
1
2 at 107.762 kb on + strand, within SM_b20099 at 107.763 kb on - strand, within SM_b20099 at 108.133 kb on + strand, within SM_b20099 at 108.134 kb on - strand, within SM_b20099 at 108.134 kb on - strand, within SM_b20099 at 108.192 kb on - strand, within SM_b20099 at 108.575 kb on + strand, within SM_b20099 at 108.992 kb on + strand, within SM_b20100 at 109.233 kb on - strand, within SM_b20100 at 109.424 kb on + strand, within SM_b20100 at 109.425 kb on - strand, within SM_b20100 at 109.528 kb on - strand, within SM_b20100 at 109.571 kb on + strand, within SM_b20100 at 109.649 kb on + strand at 109.649 kb on + strand at 109.649 kb on + strand at 109.649 kb on + strand at 109.649 kb on + strand at 109.650 kb on - strand at 109.796 kb on + strand at 109.796 kb on + strand at 109.796 kb on + strand at 109.796 kb on + strand at 109.796 kb on + strand at 109.797 kb on - strand at 109.797 kb on - strand at 109.797 kb on - strand at 109.797 kb on - strand at 109.845 kb on - strand at 109.850 kb on + strand at 109.850 kb on + strand at 109.851 kb on - strand at 109.851 kb on - strand at 109.851 kb on - strand at 110.004 kb on - strand, within SM_b20101 at 110.004 kb on - strand, within SM_b20101 at 110.006 kb on + strand, within SM_b20101 at 110.006 kb on + strand, within SM_b20101 at 110.006 kb on + strand, within SM_b20101 at 110.186 kb on + strand, within SM_b20101 at 110.186 kb on + strand, within SM_b20101 at 110.186 kb on + strand, within SM_b20101 at 110.187 kb on - strand, within SM_b20101 at 110.228 kb on - strand, within SM_b20101 at 110.513 kb on + strand, within SM_b20101 at 110.517 kb on - strand, within SM_b20101 at 110.517 kb on - strand, within SM_b20101 at 110.562 kb on - strand, within SM_b20101
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 107,762 + SM_b20099 0.39 +0.6 107,763 - SM_b20099 0.39 +1.0 108,133 + SM_b20099 0.62 -0.4 108,134 - SM_b20099 0.62 +0.1 108,134 - SM_b20099 0.62 -0.2 108,192 - SM_b20099 0.65 +0.2 108,575 + SM_b20099 0.89 +0.0 108,992 + SM_b20100 0.23 -0.1 109,233 - SM_b20100 0.48 +0.1 109,424 + SM_b20100 0.67 +0.4 109,425 - SM_b20100 0.67 +0.4 109,528 - SM_b20100 0.78 +0.1 109,571 + SM_b20100 0.82 +1.0 109,649 + +0.8 109,649 + -0.5 109,649 + -0.7 109,649 + +2.2 109,649 + +0.8 109,650 - -0.4 109,796 + -0.6 109,796 + +0.0 109,796 + +0.2 109,796 + -0.1 109,796 + -0.6 109,797 - -1.0 109,797 - +1.1 109,797 - -0.5 109,797 - -0.5 109,845 - +0.2 109,850 + -0.7 109,850 + -0.9 109,851 - -1.2 109,851 - +0.5 109,851 - +0.5 110,004 - SM_b20101 0.15 +0.4 110,004 - SM_b20101 0.15 +0.2 110,006 + SM_b20101 0.15 -0.2 110,006 + SM_b20101 0.15 -0.4 110,006 + SM_b20101 0.15 -0.1 110,186 + SM_b20101 0.30 -0.4 110,186 + SM_b20101 0.30 +0.2 110,186 + SM_b20101 0.30 -0.8 110,187 - SM_b20101 0.30 +1.7 110,228 - SM_b20101 0.33 -0.0 110,513 + SM_b20101 0.55 +0.1 110,517 - SM_b20101 0.55 +1.1 110,517 - SM_b20101 0.55 +0.6 110,562 - SM_b20101 0.59 +0.0
Or see this region's nucleotide sequence