Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20032 and SM_b20033 are separated by 389 nucleotides SM_b20033 and SM_b20034 are separated by 296 nucleotides SM_b20034 and SM_b20035 are separated by 10 nucleotides
SM_b20032: SM_b20032 - hypothetical protein, at 42,651 to 43,385
_b20032
SM_b20033: SM_b20033 - transcriptional regulator, at 43,775 to 44,437
_b20033
SM_b20034: SM_b20034 - ABC transporter, at 44,734 to 45,297
_b20034
SM_b20035: SM_b20035 - ABC transporter permease, at 45,308 to 46,588
_b20035
Position (kb) 43
44
45 Strain fitness (log2 ratio) -1
0
1
2
3 at 42.776 kb on - strand, within SM_b20032 at 42.825 kb on + strand, within SM_b20032 at 42.825 kb on + strand, within SM_b20032 at 42.826 kb on - strand, within SM_b20032 at 43.053 kb on - strand, within SM_b20032 at 43.275 kb on + strand, within SM_b20032 at 43.275 kb on + strand, within SM_b20032 at 43.275 kb on + strand, within SM_b20032 at 43.276 kb on - strand, within SM_b20032 at 43.276 kb on - strand, within SM_b20032 at 43.276 kb on - strand, within SM_b20032 at 43.358 kb on - strand at 43.358 kb on - strand at 43.358 kb on - strand at 43.537 kb on + strand at 43.537 kb on + strand at 43.538 kb on - strand at 43.538 kb on - strand at 43.538 kb on - strand at 43.675 kb on - strand at 43.777 kb on - strand at 43.777 kb on - strand at 43.813 kb on - strand at 43.813 kb on - strand at 44.068 kb on + strand, within SM_b20033 at 44.068 kb on + strand, within SM_b20033 at 44.250 kb on + strand, within SM_b20033 at 44.277 kb on + strand, within SM_b20033 at 44.277 kb on + strand, within SM_b20033 at 44.280 kb on + strand, within SM_b20033 at 44.541 kb on + strand at 44.541 kb on + strand at 44.542 kb on - strand at 44.542 kb on - strand at 44.856 kb on - strand, within SM_b20034 at 45.016 kb on - strand, within SM_b20034 at 45.016 kb on - strand, within SM_b20034 at 45.022 kb on + strand, within SM_b20034 at 45.023 kb on - strand, within SM_b20034 at 45.023 kb on - strand, within SM_b20034 at 45.023 kb on - strand, within SM_b20034 at 45.315 kb on + strand at 45.315 kb on + strand at 45.407 kb on + strand at 45.408 kb on - strand at 45.408 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 42,776 - SM_b20032 0.17 -0.7 42,825 + SM_b20032 0.24 -0.1 42,825 + SM_b20032 0.24 +0.4 42,826 - SM_b20032 0.24 +0.5 43,053 - SM_b20032 0.55 -0.6 43,275 + SM_b20032 0.85 +1.1 43,275 + SM_b20032 0.85 -0.6 43,275 + SM_b20032 0.85 -0.2 43,276 - SM_b20032 0.85 -0.4 43,276 - SM_b20032 0.85 +0.3 43,276 - SM_b20032 0.85 -0.5 43,358 - +0.8 43,358 - -0.7 43,358 - +0.3 43,537 + +2.8 43,537 + -0.4 43,538 - +1.2 43,538 - +0.3 43,538 - +0.6 43,675 - +1.1 43,777 - -0.7 43,777 - +1.5 43,813 - +1.1 43,813 - -0.9 44,068 + SM_b20033 0.44 -0.2 44,068 + SM_b20033 0.44 +0.6 44,250 + SM_b20033 0.72 -0.1 44,277 + SM_b20033 0.76 -0.5 44,277 + SM_b20033 0.76 +0.8 44,280 + SM_b20033 0.76 +0.5 44,541 + -0.5 44,541 + +0.1 44,542 - +0.4 44,542 - +0.0 44,856 - SM_b20034 0.22 -0.6 45,016 - SM_b20034 0.50 -0.1 45,016 - SM_b20034 0.50 -0.4 45,022 + SM_b20034 0.51 +0.0 45,023 - SM_b20034 0.51 +1.0 45,023 - SM_b20034 0.51 -0.1 45,023 - SM_b20034 0.51 -0.6 45,315 + -0.4 45,315 + +0.5 45,407 + +0.2 45,408 - -0.1 45,408 - +0.4
Or see this region's nucleotide sequence