Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20004 and SM_b20005 are separated by 115 nucleotides SM_b20005 and SM_b20006 are separated by 185 nucleotides SM_b20006 and SM_b20007 are separated by 114 nucleotides
SM_b20004: SM_b20004 - gstR-like transcriptional regulator protein, at 7,268 to 8,173
_b20004
SM_b20005: SM_b20005 - glutathione S-transferase, at 8,289 to 8,900
_b20005
SM_b20006: SM_b20006 - hypothetical protein, at 9,086 to 10,039
_b20006
SM_b20007: SM_b20007 - catalase C protein, at 10,154 to 12,271
_b20007
Position (kb)
9
10
11 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 8.092 kb on + strand at 8.093 kb on - strand at 8.093 kb on - strand at 8.298 kb on + strand at 8.298 kb on + strand at 8.298 kb on + strand at 8.299 kb on - strand at 8.499 kb on + strand, within SM_b20005 at 8.764 kb on - strand, within SM_b20005 at 8.770 kb on - strand, within SM_b20005 at 8.774 kb on - strand, within SM_b20005 at 8.812 kb on - strand, within SM_b20005 at 9.500 kb on - strand, within SM_b20006 at 9.561 kb on - strand, within SM_b20006 at 9.695 kb on + strand, within SM_b20006 at 10.009 kb on - strand at 10.078 kb on - strand at 10.183 kb on + strand at 10.183 kb on + strand at 10.339 kb on + strand at 10.428 kb on - strand, within SM_b20007 at 10.686 kb on + strand, within SM_b20007 at 10.686 kb on + strand, within SM_b20007 at 10.686 kb on + strand, within SM_b20007 at 10.687 kb on - strand, within SM_b20007 at 10.687 kb on - strand, within SM_b20007 at 10.687 kb on - strand, within SM_b20007 at 10.695 kb on + strand, within SM_b20007 at 10.696 kb on - strand, within SM_b20007
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 8,092 + +0.5 8,093 - -0.2 8,093 - +0.5 8,298 + -2.0 8,298 + +1.1 8,298 + +0.2 8,299 - +0.4 8,499 + SM_b20005 0.34 -0.2 8,764 - SM_b20005 0.78 -0.5 8,770 - SM_b20005 0.79 +2.4 8,774 - SM_b20005 0.79 -0.8 8,812 - SM_b20005 0.85 -0.4 9,500 - SM_b20006 0.43 -0.2 9,561 - SM_b20006 0.50 -1.5 9,695 + SM_b20006 0.64 -1.1 10,009 - -1.6 10,078 - +1.1 10,183 + -1.6 10,183 + -0.1 10,339 + +0.1 10,428 - SM_b20007 0.13 -0.3 10,686 + SM_b20007 0.25 +0.1 10,686 + SM_b20007 0.25 -0.3 10,686 + SM_b20007 0.25 -0.2 10,687 - SM_b20007 0.25 +0.7 10,687 - SM_b20007 0.25 +0.1 10,687 - SM_b20007 0.25 +0.2 10,695 + SM_b20007 0.26 -0.3 10,696 - SM_b20007 0.26 +0.4
Or see this region's nucleotide sequence