Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20006

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20004 and SM_b20005 are separated by 115 nucleotidesSM_b20005 and SM_b20006 are separated by 185 nucleotidesSM_b20006 and SM_b20007 are separated by 114 nucleotides SM_b20004: SM_b20004 - gstR-like transcriptional regulator protein, at 7,268 to 8,173 _b20004 SM_b20005: SM_b20005 - glutathione S-transferase, at 8,289 to 8,900 _b20005 SM_b20006: SM_b20006 - hypothetical protein, at 9,086 to 10,039 _b20006 SM_b20007: SM_b20007 - catalase C protein, at 10,154 to 12,271 _b20007 Position (kb) 9 10 11Strain fitness (log2 ratio) -2 -1 0 1 2at 8.092 kb on + strandat 8.093 kb on - strandat 8.093 kb on - strandat 8.298 kb on + strandat 8.298 kb on + strandat 8.298 kb on + strandat 8.299 kb on - strandat 8.499 kb on + strand, within SM_b20005at 8.764 kb on - strand, within SM_b20005at 8.770 kb on - strand, within SM_b20005at 8.774 kb on - strand, within SM_b20005at 8.812 kb on - strand, within SM_b20005at 9.500 kb on - strand, within SM_b20006at 9.561 kb on - strand, within SM_b20006at 9.695 kb on + strand, within SM_b20006at 10.009 kb on - strandat 10.078 kb on - strandat 10.183 kb on + strandat 10.183 kb on + strandat 10.339 kb on + strandat 10.428 kb on - strand, within SM_b20007at 10.686 kb on + strand, within SM_b20007at 10.686 kb on + strand, within SM_b20007at 10.686 kb on + strand, within SM_b20007at 10.687 kb on - strand, within SM_b20007at 10.687 kb on - strand, within SM_b20007at 10.687 kb on - strand, within SM_b20007at 10.695 kb on + strand, within SM_b20007at 10.696 kb on - strand, within SM_b20007

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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8,092 + +0.5
8,093 - -0.2
8,093 - +0.5
8,298 + -2.0
8,298 + +1.1
8,298 + +0.2
8,299 - +0.4
8,499 + SM_b20005 0.34 -0.2
8,764 - SM_b20005 0.78 -0.5
8,770 - SM_b20005 0.79 +2.4
8,774 - SM_b20005 0.79 -0.8
8,812 - SM_b20005 0.85 -0.4
9,500 - SM_b20006 0.43 -0.2
9,561 - SM_b20006 0.50 -1.5
9,695 + SM_b20006 0.64 -1.1
10,009 - -1.6
10,078 - +1.1
10,183 + -1.6
10,183 + -0.1
10,339 + +0.1
10,428 - SM_b20007 0.13 -0.3
10,686 + SM_b20007 0.25 +0.1
10,686 + SM_b20007 0.25 -0.3
10,686 + SM_b20007 0.25 -0.2
10,687 - SM_b20007 0.25 +0.7
10,687 - SM_b20007 0.25 +0.1
10,687 - SM_b20007 0.25 +0.2
10,695 + SM_b20007 0.26 -0.3
10,696 - SM_b20007 0.26 +0.4

Or see this region's nucleotide sequence