Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS37365 and RR42_RS37370 are separated by 206 nucleotides RR42_RS37370 and RR42_RS37375 are separated by 152 nucleotides RR42_RS37375 and RR42_RS37380 are separated by 251 nucleotides
RR42_RS37365: RR42_RS37365 - fumarate hydratase, at 3,861,287 to 3,862,693
_RS37365
RR42_RS37370: RR42_RS37370 - hypothetical protein, at 3,862,900 to 3,863,286
_RS37370
RR42_RS37375: RR42_RS37375 - short-chain dehydrogenase, at 3,863,439 to 3,864,161
_RS37375
RR42_RS37380: RR42_RS37380 - 2-hydroxyacid dehydrogenase, at 3,864,413 to 3,865,348
_RS37380
Position (kb)
3863
3864
3865 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3862.474 kb on - strand, within RR42_RS37365 at 3862.474 kb on - strand, within RR42_RS37365 at 3862.689 kb on + strand at 3862.689 kb on + strand at 3862.689 kb on + strand at 3862.689 kb on + strand at 3862.689 kb on + strand at 3862.690 kb on - strand at 3862.690 kb on - strand at 3862.690 kb on - strand at 3862.730 kb on + strand at 3862.760 kb on - strand at 3862.785 kb on - strand at 3862.844 kb on - strand at 3862.901 kb on + strand at 3862.994 kb on + strand, within RR42_RS37370 at 3862.994 kb on + strand, within RR42_RS37370 at 3862.994 kb on + strand, within RR42_RS37370 at 3862.994 kb on + strand, within RR42_RS37370 at 3862.995 kb on - strand, within RR42_RS37370 at 3862.995 kb on - strand, within RR42_RS37370 at 3863.038 kb on - strand, within RR42_RS37370 at 3863.078 kb on + strand, within RR42_RS37370 at 3863.078 kb on + strand, within RR42_RS37370 at 3863.079 kb on - strand, within RR42_RS37370 at 3863.085 kb on - strand, within RR42_RS37370 at 3863.085 kb on - strand, within RR42_RS37370 at 3863.085 kb on - strand, within RR42_RS37370 at 3863.168 kb on + strand, within RR42_RS37370 at 3863.169 kb on - strand, within RR42_RS37370 at 3863.320 kb on + strand at 3863.321 kb on - strand at 3863.474 kb on + strand at 3863.475 kb on - strand at 3863.475 kb on - strand at 3863.475 kb on - strand at 3863.475 kb on - strand at 3863.475 kb on - strand at 3863.507 kb on - strand at 3863.648 kb on + strand, within RR42_RS37375 at 3863.649 kb on - strand, within RR42_RS37375 at 3864.018 kb on + strand, within RR42_RS37375 at 3864.018 kb on + strand, within RR42_RS37375 at 3864.019 kb on - strand, within RR42_RS37375 at 3864.235 kb on + strand at 3864.236 kb on - strand at 3864.236 kb on - strand at 3864.236 kb on - strand at 3864.341 kb on - strand at 3864.480 kb on - strand at 3864.480 kb on - strand at 3864.480 kb on - strand at 3864.641 kb on + strand, within RR42_RS37380 at 3864.953 kb on + strand, within RR42_RS37380 at 3864.960 kb on - strand, within RR42_RS37380 at 3864.998 kb on + strand, within RR42_RS37380 at 3864.998 kb on + strand, within RR42_RS37380 at 3864.999 kb on - strand, within RR42_RS37380 at 3864.999 kb on - strand, within RR42_RS37380 at 3864.999 kb on - strand, within RR42_RS37380
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 3,862,474 - RR42_RS37365 0.84 +1.3 3,862,474 - RR42_RS37365 0.84 +0.1 3,862,689 + +0.2 3,862,689 + +0.1 3,862,689 + -0.4 3,862,689 + +0.9 3,862,689 + +0.1 3,862,690 - -0.7 3,862,690 - -0.1 3,862,690 - +0.9 3,862,730 + +0.5 3,862,760 - +0.3 3,862,785 - +1.0 3,862,844 - +0.2 3,862,901 + +1.6 3,862,994 + RR42_RS37370 0.24 +0.5 3,862,994 + RR42_RS37370 0.24 +0.9 3,862,994 + RR42_RS37370 0.24 -0.1 3,862,994 + RR42_RS37370 0.24 -0.0 3,862,995 - RR42_RS37370 0.25 -0.7 3,862,995 - RR42_RS37370 0.25 -0.0 3,863,038 - RR42_RS37370 0.36 -0.6 3,863,078 + RR42_RS37370 0.46 +0.2 3,863,078 + RR42_RS37370 0.46 +1.6 3,863,079 - RR42_RS37370 0.46 -0.5 3,863,085 - RR42_RS37370 0.48 +1.3 3,863,085 - RR42_RS37370 0.48 +1.8 3,863,085 - RR42_RS37370 0.48 +0.1 3,863,168 + RR42_RS37370 0.69 +1.1 3,863,169 - RR42_RS37370 0.70 -0.7 3,863,320 + -2.1 3,863,321 - +0.6 3,863,474 + -0.6 3,863,475 - +0.0 3,863,475 - +0.9 3,863,475 - +0.9 3,863,475 - +0.5 3,863,475 - +0.1 3,863,507 - -1.9 3,863,648 + RR42_RS37375 0.29 -2.2 3,863,649 - RR42_RS37375 0.29 -1.4 3,864,018 + RR42_RS37375 0.80 -0.3 3,864,018 + RR42_RS37375 0.80 +0.1 3,864,019 - RR42_RS37375 0.80 -1.4 3,864,235 + +1.5 3,864,236 - +0.8 3,864,236 - -0.5 3,864,236 - +0.2 3,864,341 - +2.3 3,864,480 - -0.2 3,864,480 - +0.5 3,864,480 - +0.7 3,864,641 + RR42_RS37380 0.24 -0.7 3,864,953 + RR42_RS37380 0.58 -0.1 3,864,960 - RR42_RS37380 0.58 +0.6 3,864,998 + RR42_RS37380 0.62 +0.9 3,864,998 + RR42_RS37380 0.62 -0.2 3,864,999 - RR42_RS37380 0.63 +0.9 3,864,999 - RR42_RS37380 0.63 +0.6 3,864,999 - RR42_RS37380 0.63 +0.9
Or see this region's nucleotide sequence