Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS37375

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS37365 and RR42_RS37370 are separated by 206 nucleotidesRR42_RS37370 and RR42_RS37375 are separated by 152 nucleotidesRR42_RS37375 and RR42_RS37380 are separated by 251 nucleotides RR42_RS37365: RR42_RS37365 - fumarate hydratase, at 3,861,287 to 3,862,693 _RS37365 RR42_RS37370: RR42_RS37370 - hypothetical protein, at 3,862,900 to 3,863,286 _RS37370 RR42_RS37375: RR42_RS37375 - short-chain dehydrogenase, at 3,863,439 to 3,864,161 _RS37375 RR42_RS37380: RR42_RS37380 - 2-hydroxyacid dehydrogenase, at 3,864,413 to 3,865,348 _RS37380 Position (kb) 3863 3864 3865Strain fitness (log2 ratio) -2 -1 0 1 2at 3862.474 kb on - strand, within RR42_RS37365at 3862.474 kb on - strand, within RR42_RS37365at 3862.689 kb on + strandat 3862.689 kb on + strandat 3862.689 kb on + strandat 3862.689 kb on + strandat 3862.689 kb on + strandat 3862.690 kb on - strandat 3862.690 kb on - strandat 3862.690 kb on - strandat 3862.730 kb on + strandat 3862.760 kb on - strandat 3862.785 kb on - strandat 3862.844 kb on - strandat 3862.901 kb on + strandat 3862.994 kb on + strand, within RR42_RS37370at 3862.994 kb on + strand, within RR42_RS37370at 3862.994 kb on + strand, within RR42_RS37370at 3862.994 kb on + strand, within RR42_RS37370at 3862.995 kb on - strand, within RR42_RS37370at 3862.995 kb on - strand, within RR42_RS37370at 3863.038 kb on - strand, within RR42_RS37370at 3863.078 kb on + strand, within RR42_RS37370at 3863.078 kb on + strand, within RR42_RS37370at 3863.079 kb on - strand, within RR42_RS37370at 3863.085 kb on - strand, within RR42_RS37370at 3863.085 kb on - strand, within RR42_RS37370at 3863.085 kb on - strand, within RR42_RS37370at 3863.168 kb on + strand, within RR42_RS37370at 3863.169 kb on - strand, within RR42_RS37370at 3863.320 kb on + strandat 3863.321 kb on - strandat 3863.474 kb on + strandat 3863.475 kb on - strandat 3863.475 kb on - strandat 3863.475 kb on - strandat 3863.475 kb on - strandat 3863.475 kb on - strandat 3863.507 kb on - strandat 3863.648 kb on + strand, within RR42_RS37375at 3863.649 kb on - strand, within RR42_RS37375at 3864.018 kb on + strand, within RR42_RS37375at 3864.018 kb on + strand, within RR42_RS37375at 3864.019 kb on - strand, within RR42_RS37375at 3864.235 kb on + strandat 3864.236 kb on - strandat 3864.236 kb on - strandat 3864.236 kb on - strandat 3864.341 kb on - strandat 3864.480 kb on - strandat 3864.480 kb on - strandat 3864.480 kb on - strandat 3864.641 kb on + strand, within RR42_RS37380at 3864.953 kb on + strand, within RR42_RS37380at 3864.960 kb on - strand, within RR42_RS37380at 3864.998 kb on + strand, within RR42_RS37380at 3864.998 kb on + strand, within RR42_RS37380at 3864.999 kb on - strand, within RR42_RS37380at 3864.999 kb on - strand, within RR42_RS37380at 3864.999 kb on - strand, within RR42_RS37380

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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3,862,474 - RR42_RS37365 0.84 +1.3
3,862,474 - RR42_RS37365 0.84 +0.1
3,862,689 + +0.2
3,862,689 + +0.1
3,862,689 + -0.4
3,862,689 + +0.9
3,862,689 + +0.1
3,862,690 - -0.7
3,862,690 - -0.1
3,862,690 - +0.9
3,862,730 + +0.5
3,862,760 - +0.3
3,862,785 - +1.0
3,862,844 - +0.2
3,862,901 + +1.6
3,862,994 + RR42_RS37370 0.24 +0.5
3,862,994 + RR42_RS37370 0.24 +0.9
3,862,994 + RR42_RS37370 0.24 -0.1
3,862,994 + RR42_RS37370 0.24 -0.0
3,862,995 - RR42_RS37370 0.25 -0.7
3,862,995 - RR42_RS37370 0.25 -0.0
3,863,038 - RR42_RS37370 0.36 -0.6
3,863,078 + RR42_RS37370 0.46 +0.2
3,863,078 + RR42_RS37370 0.46 +1.6
3,863,079 - RR42_RS37370 0.46 -0.5
3,863,085 - RR42_RS37370 0.48 +1.3
3,863,085 - RR42_RS37370 0.48 +1.8
3,863,085 - RR42_RS37370 0.48 +0.1
3,863,168 + RR42_RS37370 0.69 +1.1
3,863,169 - RR42_RS37370 0.70 -0.7
3,863,320 + -2.1
3,863,321 - +0.6
3,863,474 + -0.6
3,863,475 - +0.0
3,863,475 - +0.9
3,863,475 - +0.9
3,863,475 - +0.5
3,863,475 - +0.1
3,863,507 - -1.9
3,863,648 + RR42_RS37375 0.29 -2.2
3,863,649 - RR42_RS37375 0.29 -1.4
3,864,018 + RR42_RS37375 0.80 -0.3
3,864,018 + RR42_RS37375 0.80 +0.1
3,864,019 - RR42_RS37375 0.80 -1.4
3,864,235 + +1.5
3,864,236 - +0.8
3,864,236 - -0.5
3,864,236 - +0.2
3,864,341 - +2.3
3,864,480 - -0.2
3,864,480 - +0.5
3,864,480 - +0.7
3,864,641 + RR42_RS37380 0.24 -0.7
3,864,953 + RR42_RS37380 0.58 -0.1
3,864,960 - RR42_RS37380 0.58 +0.6
3,864,998 + RR42_RS37380 0.62 +0.9
3,864,998 + RR42_RS37380 0.62 -0.2
3,864,999 - RR42_RS37380 0.63 +0.9
3,864,999 - RR42_RS37380 0.63 +0.6
3,864,999 - RR42_RS37380 0.63 +0.9

Or see this region's nucleotide sequence