Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34585

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS34575 and RR42_RS34580 are separated by 29 nucleotidesRR42_RS34580 and RR42_RS34585 are separated by 142 nucleotidesRR42_RS34585 and RR42_RS34590 are separated by 242 nucleotidesRR42_RS34590 and RR42_RS34595 are separated by 58 nucleotides RR42_RS34575: RR42_RS34575 - transposase, at 3,198,817 to 3,199,221 _RS34575 RR42_RS34580: RR42_RS34580 - hypothetical protein, at 3,199,251 to 3,200,060 _RS34580 RR42_RS34585: RR42_RS34585 - LysR family transcriptional regulator, at 3,200,203 to 3,201,114 _RS34585 RR42_RS34590: RR42_RS34590 - glutathione S-transferase, at 3,201,357 to 3,201,971 _RS34590 RR42_RS34595: RR42_RS34595 - FAD-binding oxidoreductase, at 3,202,030 to 3,204,144 _RS34595 Position (kb) 3200 3201 3202Strain fitness (log2 ratio) -1 0 1 2at 3200.091 kb on + strandat 3200.153 kb on + strandat 3200.153 kb on + strandat 3200.154 kb on - strandat 3200.154 kb on - strandat 3200.155 kb on + strandat 3200.155 kb on + strandat 3200.155 kb on + strandat 3200.155 kb on + strandat 3200.155 kb on + strandat 3200.155 kb on + strandat 3200.155 kb on + strandat 3200.156 kb on - strandat 3200.156 kb on - strandat 3200.156 kb on - strandat 3200.156 kb on - strandat 3200.157 kb on + strandat 3200.157 kb on + strandat 3200.157 kb on + strandat 3200.157 kb on + strandat 3200.157 kb on + strandat 3200.158 kb on - strandat 3200.158 kb on - strandat 3200.292 kb on - strandat 3200.395 kb on + strand, within RR42_RS34585at 3200.396 kb on - strand, within RR42_RS34585at 3201.155 kb on + strandat 3201.200 kb on + strandat 3201.200 kb on + strandat 3201.200 kb on + strandat 3201.200 kb on + strandat 3201.201 kb on - strandat 3201.201 kb on - strandat 3201.366 kb on + strandat 3201.366 kb on + strandat 3201.567 kb on + strand, within RR42_RS34590at 3201.567 kb on + strand, within RR42_RS34590at 3201.567 kb on + strand, within RR42_RS34590at 3201.568 kb on - strand, within RR42_RS34590at 3201.568 kb on - strand, within RR42_RS34590at 3201.714 kb on + strand, within RR42_RS34590at 3201.714 kb on + strand, within RR42_RS34590at 3201.715 kb on - strand, within RR42_RS34590at 3201.831 kb on + strand, within RR42_RS34590at 3201.832 kb on - strand, within RR42_RS34590at 3201.832 kb on - strand, within RR42_RS34590at 3201.832 kb on - strand, within RR42_RS34590at 3201.832 kb on - strand, within RR42_RS34590at 3201.837 kb on + strand, within RR42_RS34590at 3201.837 kb on + strand, within RR42_RS34590at 3201.837 kb on + strand, within RR42_RS34590at 3201.838 kb on - strand, within RR42_RS34590at 3201.838 kb on - strand, within RR42_RS34590

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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3,200,091 + -0.3
3,200,153 + +0.0
3,200,153 + -0.4
3,200,154 - -0.5
3,200,154 - +1.6
3,200,155 + -0.4
3,200,155 + +0.4
3,200,155 + +0.5
3,200,155 + -0.1
3,200,155 + -0.6
3,200,155 + -0.2
3,200,155 + -1.1
3,200,156 - -1.2
3,200,156 - -0.2
3,200,156 - -0.9
3,200,156 - -1.3
3,200,157 + +0.5
3,200,157 + -0.9
3,200,157 + -0.5
3,200,157 + -0.6
3,200,157 + -1.6
3,200,158 - -0.0
3,200,158 - -0.0
3,200,292 - +0.4
3,200,395 + RR42_RS34585 0.21 -0.1
3,200,396 - RR42_RS34585 0.21 -0.7
3,201,155 + -0.1
3,201,200 + +0.4
3,201,200 + +0.7
3,201,200 + +1.9
3,201,200 + -0.8
3,201,201 - -0.9
3,201,201 - +0.3
3,201,366 + -1.4
3,201,366 + -0.4
3,201,567 + RR42_RS34590 0.34 +0.8
3,201,567 + RR42_RS34590 0.34 -0.6
3,201,567 + RR42_RS34590 0.34 +0.3
3,201,568 - RR42_RS34590 0.34 +0.0
3,201,568 - RR42_RS34590 0.34 +1.3
3,201,714 + RR42_RS34590 0.58 -0.0
3,201,714 + RR42_RS34590 0.58 -0.6
3,201,715 - RR42_RS34590 0.58 -0.3
3,201,831 + RR42_RS34590 0.77 -0.1
3,201,832 - RR42_RS34590 0.77 -1.0
3,201,832 - RR42_RS34590 0.77 -0.3
3,201,832 - RR42_RS34590 0.77 -1.7
3,201,832 - RR42_RS34590 0.77 +1.4
3,201,837 + RR42_RS34590 0.78 +0.8
3,201,837 + RR42_RS34590 0.78 +0.8
3,201,837 + RR42_RS34590 0.78 -1.4
3,201,838 - RR42_RS34590 0.78 -0.8
3,201,838 - RR42_RS34590 0.78 -0.0

Or see this region's nucleotide sequence