Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27965

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS27960 and RR42_RS27965 are separated by 43 nucleotidesRR42_RS27965 and RR42_RS27970 are separated by 95 nucleotides RR42_RS27960: RR42_RS27960 - ornithine cyclodeaminase, at 1,635,732 to 1,636,724 _RS27960 RR42_RS27965: RR42_RS27965 - ferredoxin:oxidoreductase FAD/NAD(P)-binding protein, at 1,636,768 to 1,640,193 _RS27965 RR42_RS27970: RR42_RS27970 - LysR family transcriptional regulator, at 1,640,289 to 1,641,206 _RS27970 Position (kb) 1636 1637 1638 1639 1640 1641Strain fitness (log2 ratio) -2 -1 0 1 2at 1635.805 kb on + strandat 1636.151 kb on + strand, within RR42_RS27960at 1636.152 kb on - strand, within RR42_RS27960at 1636.254 kb on - strand, within RR42_RS27960at 1636.354 kb on + strand, within RR42_RS27960at 1636.354 kb on + strand, within RR42_RS27960at 1636.354 kb on + strand, within RR42_RS27960at 1636.369 kb on + strand, within RR42_RS27960at 1636.369 kb on + strand, within RR42_RS27960at 1636.369 kb on + strand, within RR42_RS27960at 1636.505 kb on + strand, within RR42_RS27960at 1636.506 kb on - strand, within RR42_RS27960at 1636.506 kb on - strand, within RR42_RS27960at 1636.506 kb on - strand, within RR42_RS27960at 1636.506 kb on - strand, within RR42_RS27960at 1636.506 kb on - strand, within RR42_RS27960at 1636.543 kb on + strand, within RR42_RS27960at 1636.716 kb on + strandat 1637.145 kb on + strand, within RR42_RS27965at 1637.146 kb on - strand, within RR42_RS27965at 1637.146 kb on - strand, within RR42_RS27965at 1637.146 kb on - strand, within RR42_RS27965at 1637.146 kb on - strand, within RR42_RS27965at 1637.146 kb on - strand, within RR42_RS27965at 1637.146 kb on - strand, within RR42_RS27965at 1637.147 kb on + strand, within RR42_RS27965at 1637.147 kb on + strand, within RR42_RS27965at 1637.216 kb on + strand, within RR42_RS27965at 1637.530 kb on - strand, within RR42_RS27965at 1637.603 kb on + strand, within RR42_RS27965at 1637.645 kb on + strand, within RR42_RS27965at 1637.645 kb on + strand, within RR42_RS27965at 1637.646 kb on - strand, within RR42_RS27965at 1637.646 kb on - strand, within RR42_RS27965at 1637.653 kb on + strand, within RR42_RS27965at 1637.654 kb on - strand, within RR42_RS27965at 1637.753 kb on - strand, within RR42_RS27965at 1637.930 kb on + strand, within RR42_RS27965at 1637.930 kb on + strand, within RR42_RS27965at 1637.930 kb on + strand, within RR42_RS27965at 1637.931 kb on - strand, within RR42_RS27965at 1637.931 kb on - strand, within RR42_RS27965at 1637.931 kb on - strand, within RR42_RS27965at 1637.931 kb on - strand, within RR42_RS27965at 1638.200 kb on + strand, within RR42_RS27965at 1638.200 kb on + strand, within RR42_RS27965at 1638.201 kb on - strand, within RR42_RS27965at 1638.204 kb on - strand, within RR42_RS27965at 1638.204 kb on - strand, within RR42_RS27965at 1638.204 kb on - strand, within RR42_RS27965at 1638.383 kb on + strand, within RR42_RS27965at 1638.384 kb on - strand, within RR42_RS27965at 1638.734 kb on + strand, within RR42_RS27965at 1638.735 kb on - strand, within RR42_RS27965at 1638.735 kb on - strand, within RR42_RS27965at 1638.974 kb on + strand, within RR42_RS27965at 1639.034 kb on + strand, within RR42_RS27965at 1639.034 kb on + strand, within RR42_RS27965at 1639.104 kb on - strand, within RR42_RS27965at 1639.183 kb on + strand, within RR42_RS27965at 1639.217 kb on + strand, within RR42_RS27965at 1639.217 kb on + strand, within RR42_RS27965at 1639.288 kb on + strand, within RR42_RS27965at 1639.289 kb on - strand, within RR42_RS27965at 1639.367 kb on + strand, within RR42_RS27965at 1639.368 kb on - strand, within RR42_RS27965at 1639.368 kb on - strand, within RR42_RS27965at 1639.591 kb on + strand, within RR42_RS27965at 1639.591 kb on + strand, within RR42_RS27965at 1639.592 kb on - strand, within RR42_RS27965at 1639.748 kb on + strand, within RR42_RS27965at 1639.749 kb on - strand, within RR42_RS27965at 1639.953 kb on + strandat 1639.953 kb on + strandat 1639.953 kb on + strandat 1639.954 kb on - strandat 1640.228 kb on + strandat 1640.228 kb on + strandat 1640.228 kb on + strandat 1640.229 kb on - strandat 1640.232 kb on + strandat 1640.233 kb on - strandat 1640.233 kb on - strandat 1640.233 kb on - strandat 1640.269 kb on + strandat 1640.303 kb on - strandat 1640.303 kb on - strandat 1640.303 kb on - strandat 1640.374 kb on + strandat 1640.374 kb on + strandat 1640.374 kb on + strandat 1640.374 kb on + strandat 1640.374 kb on + strandat 1640.555 kb on - strand, within RR42_RS27970at 1640.604 kb on + strand, within RR42_RS27970at 1640.604 kb on + strand, within RR42_RS27970at 1640.604 kb on + strand, within RR42_RS27970at 1640.604 kb on + strand, within RR42_RS27970at 1640.604 kb on + strand, within RR42_RS27970at 1640.605 kb on - strand, within RR42_RS27970at 1640.605 kb on - strand, within RR42_RS27970at 1640.623 kb on + strand, within RR42_RS27970at 1640.623 kb on + strand, within RR42_RS27970at 1640.624 kb on - strand, within RR42_RS27970at 1640.624 kb on - strand, within RR42_RS27970at 1640.800 kb on + strand, within RR42_RS27970at 1640.801 kb on - strand, within RR42_RS27970at 1640.801 kb on - strand, within RR42_RS27970at 1640.801 kb on - strand, within RR42_RS27970at 1640.801 kb on - strand, within RR42_RS27970at 1640.871 kb on + strand, within RR42_RS27970at 1640.871 kb on + strand, within RR42_RS27970at 1640.871 kb on + strand, within RR42_RS27970at 1640.872 kb on - strand, within RR42_RS27970at 1640.872 kb on - strand, within RR42_RS27970at 1640.872 kb on - strand, within RR42_RS27970at 1640.916 kb on + strand, within RR42_RS27970at 1640.916 kb on + strand, within RR42_RS27970at 1640.916 kb on + strand, within RR42_RS27970at 1640.917 kb on - strand, within RR42_RS27970at 1640.917 kb on - strand, within RR42_RS27970at 1640.928 kb on + strand, within RR42_RS27970at 1640.928 kb on + strand, within RR42_RS27970at 1640.929 kb on - strand, within RR42_RS27970at 1641.112 kb on + strand, within RR42_RS27970at 1641.112 kb on + strand, within RR42_RS27970at 1641.113 kb on - strand, within RR42_RS27970at 1641.162 kb on + strandat 1641.162 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,635,805 + +0.6
1,636,151 + RR42_RS27960 0.42 -0.5
1,636,152 - RR42_RS27960 0.42 -0.1
1,636,254 - RR42_RS27960 0.53 -0.5
1,636,354 + RR42_RS27960 0.63 -0.9
1,636,354 + RR42_RS27960 0.63 +0.8
1,636,354 + RR42_RS27960 0.63 +0.3
1,636,369 + RR42_RS27960 0.64 +0.1
1,636,369 + RR42_RS27960 0.64 +1.7
1,636,369 + RR42_RS27960 0.64 -2.6
1,636,505 + RR42_RS27960 0.78 +0.9
1,636,506 - RR42_RS27960 0.78 +0.1
1,636,506 - RR42_RS27960 0.78 -0.5
1,636,506 - RR42_RS27960 0.78 -0.6
1,636,506 - RR42_RS27960 0.78 -0.0
1,636,506 - RR42_RS27960 0.78 -0.3
1,636,543 + RR42_RS27960 0.82 +0.7
1,636,716 + +0.1
1,637,145 + RR42_RS27965 0.11 +0.3
1,637,146 - RR42_RS27965 0.11 -0.0
1,637,146 - RR42_RS27965 0.11 +0.2
1,637,146 - RR42_RS27965 0.11 +1.5
1,637,146 - RR42_RS27965 0.11 +0.6
1,637,146 - RR42_RS27965 0.11 +0.6
1,637,146 - RR42_RS27965 0.11 +0.8
1,637,147 + RR42_RS27965 0.11 +0.9
1,637,147 + RR42_RS27965 0.11 +0.2
1,637,216 + RR42_RS27965 0.13 +0.1
1,637,530 - RR42_RS27965 0.22 +0.5
1,637,603 + RR42_RS27965 0.24 +0.7
1,637,645 + RR42_RS27965 0.26 +1.6
1,637,645 + RR42_RS27965 0.26 +1.1
1,637,646 - RR42_RS27965 0.26 -0.3
1,637,646 - RR42_RS27965 0.26 +0.3
1,637,653 + RR42_RS27965 0.26 -0.1
1,637,654 - RR42_RS27965 0.26 -0.5
1,637,753 - RR42_RS27965 0.29 -0.5
1,637,930 + RR42_RS27965 0.34 -1.8
1,637,930 + RR42_RS27965 0.34 +0.2
1,637,930 + RR42_RS27965 0.34 -1.1
1,637,931 - RR42_RS27965 0.34 +0.2
1,637,931 - RR42_RS27965 0.34 +0.8
1,637,931 - RR42_RS27965 0.34 -0.7
1,637,931 - RR42_RS27965 0.34 +0.4
1,638,200 + RR42_RS27965 0.42 +0.3
1,638,200 + RR42_RS27965 0.42 -0.1
1,638,201 - RR42_RS27965 0.42 +0.7
1,638,204 - RR42_RS27965 0.42 -0.3
1,638,204 - RR42_RS27965 0.42 +0.3
1,638,204 - RR42_RS27965 0.42 -0.7
1,638,383 + RR42_RS27965 0.47 -0.4
1,638,384 - RR42_RS27965 0.47 +0.3
1,638,734 + RR42_RS27965 0.57 +0.7
1,638,735 - RR42_RS27965 0.57 +0.9
1,638,735 - RR42_RS27965 0.57 -0.3
1,638,974 + RR42_RS27965 0.64 +0.3
1,639,034 + RR42_RS27965 0.66 -0.3
1,639,034 + RR42_RS27965 0.66 +0.2
1,639,104 - RR42_RS27965 0.68 -0.7
1,639,183 + RR42_RS27965 0.70 -1.8
1,639,217 + RR42_RS27965 0.71 +1.5
1,639,217 + RR42_RS27965 0.71 -1.0
1,639,288 + RR42_RS27965 0.74 +0.9
1,639,289 - RR42_RS27965 0.74 +0.9
1,639,367 + RR42_RS27965 0.76 +0.6
1,639,368 - RR42_RS27965 0.76 -0.5
1,639,368 - RR42_RS27965 0.76 -1.1
1,639,591 + RR42_RS27965 0.82 -0.4
1,639,591 + RR42_RS27965 0.82 +0.3
1,639,592 - RR42_RS27965 0.82 -0.2
1,639,748 + RR42_RS27965 0.87 +0.0
1,639,749 - RR42_RS27965 0.87 +1.2
1,639,953 + -0.0
1,639,953 + +1.7
1,639,953 + +0.2
1,639,954 - -0.2
1,640,228 + +0.0
1,640,228 + +0.1
1,640,228 + +0.5
1,640,229 - +2.2
1,640,232 + +0.2
1,640,233 - +1.2
1,640,233 - +1.2
1,640,233 - +0.8
1,640,269 + +0.9
1,640,303 - +0.5
1,640,303 - -1.6
1,640,303 - -2.0
1,640,374 + +0.3
1,640,374 + +0.9
1,640,374 + -1.3
1,640,374 + -1.7
1,640,374 + +0.1
1,640,555 - RR42_RS27970 0.29 -0.7
1,640,604 + RR42_RS27970 0.34 -1.4
1,640,604 + RR42_RS27970 0.34 +0.3
1,640,604 + RR42_RS27970 0.34 +0.2
1,640,604 + RR42_RS27970 0.34 -1.3
1,640,604 + RR42_RS27970 0.34 +0.8
1,640,605 - RR42_RS27970 0.34 -0.1
1,640,605 - RR42_RS27970 0.34 -0.1
1,640,623 + RR42_RS27970 0.36 -1.1
1,640,623 + RR42_RS27970 0.36 +0.6
1,640,624 - RR42_RS27970 0.36 +0.0
1,640,624 - RR42_RS27970 0.36 -0.9
1,640,800 + RR42_RS27970 0.56 -0.7
1,640,801 - RR42_RS27970 0.56 -1.1
1,640,801 - RR42_RS27970 0.56 -0.8
1,640,801 - RR42_RS27970 0.56 +0.3
1,640,801 - RR42_RS27970 0.56 -1.0
1,640,871 + RR42_RS27970 0.63 -0.4
1,640,871 + RR42_RS27970 0.63 -0.4
1,640,871 + RR42_RS27970 0.63 +1.9
1,640,872 - RR42_RS27970 0.64 +0.6
1,640,872 - RR42_RS27970 0.64 -0.0
1,640,872 - RR42_RS27970 0.64 -0.1
1,640,916 + RR42_RS27970 0.68 +0.2
1,640,916 + RR42_RS27970 0.68 -0.3
1,640,916 + RR42_RS27970 0.68 -0.4
1,640,917 - RR42_RS27970 0.68 +1.6
1,640,917 - RR42_RS27970 0.68 +0.7
1,640,928 + RR42_RS27970 0.70 -0.4
1,640,928 + RR42_RS27970 0.70 -0.1
1,640,929 - RR42_RS27970 0.70 +2.0
1,641,112 + RR42_RS27970 0.90 +0.9
1,641,112 + RR42_RS27970 0.90 -0.1
1,641,113 - RR42_RS27970 0.90 +0.2
1,641,162 + +0.9
1,641,162 + -0.0

Or see this region's nucleotide sequence