Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27200

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS27195 and RR42_RS27200 are separated by 123 nucleotidesRR42_RS27200 and RR42_RS27205 are separated by 110 nucleotidesRR42_RS27205 and RR42_RS27210 overlap by 4 nucleotides RR42_RS27195: RR42_RS27195 - LysR family transcriptional regulator, at 1,453,644 to 1,454,543 _RS27195 RR42_RS27200: RR42_RS27200 - LacI family transcriptional regulator, at 1,454,667 to 1,455,638 _RS27200 RR42_RS27205: RR42_RS27205 - GlcNAc-PI de-N-acetylase, at 1,455,749 to 1,456,498 _RS27205 RR42_RS27210: RR42_RS27210 - hypothetical protein, at 1,456,495 to 1,457,208 _RS27210 Position (kb) 1454 1455 1456Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1453.786 kb on + strand, within RR42_RS27195at 1453.786 kb on + strand, within RR42_RS27195at 1453.787 kb on - strand, within RR42_RS27195at 1453.824 kb on + strand, within RR42_RS27195at 1453.825 kb on - strand, within RR42_RS27195at 1454.084 kb on - strand, within RR42_RS27195at 1454.162 kb on + strand, within RR42_RS27195at 1454.162 kb on + strand, within RR42_RS27195at 1454.162 kb on + strand, within RR42_RS27195at 1454.162 kb on + strand, within RR42_RS27195at 1454.162 kb on + strand, within RR42_RS27195at 1454.162 kb on + strand, within RR42_RS27195at 1454.162 kb on + strand, within RR42_RS27195at 1454.162 kb on + strand, within RR42_RS27195at 1454.162 kb on + strand, within RR42_RS27195at 1454.162 kb on + strand, within RR42_RS27195at 1454.162 kb on + strand, within RR42_RS27195at 1454.163 kb on - strand, within RR42_RS27195at 1454.163 kb on - strand, within RR42_RS27195at 1454.163 kb on - strand, within RR42_RS27195at 1454.163 kb on - strand, within RR42_RS27195at 1454.163 kb on - strand, within RR42_RS27195at 1454.163 kb on - strand, within RR42_RS27195at 1454.163 kb on - strand, within RR42_RS27195at 1454.163 kb on - strand, within RR42_RS27195at 1454.163 kb on - strand, within RR42_RS27195at 1454.163 kb on - strand, within RR42_RS27195at 1454.163 kb on - strand, within RR42_RS27195at 1454.163 kb on - strand, within RR42_RS27195at 1454.163 kb on - strand, within RR42_RS27195at 1454.163 kb on - strand, within RR42_RS27195at 1454.253 kb on - strand, within RR42_RS27195at 1454.465 kb on + strandat 1454.466 kb on - strandat 1454.564 kb on - strandat 1454.584 kb on - strandat 1454.584 kb on - strandat 1454.778 kb on + strand, within RR42_RS27200at 1454.778 kb on + strand, within RR42_RS27200at 1454.779 kb on - strand, within RR42_RS27200at 1454.928 kb on + strand, within RR42_RS27200at 1454.929 kb on - strand, within RR42_RS27200at 1455.129 kb on + strand, within RR42_RS27200at 1455.129 kb on + strand, within RR42_RS27200at 1455.129 kb on + strand, within RR42_RS27200at 1455.216 kb on + strand, within RR42_RS27200at 1455.217 kb on - strand, within RR42_RS27200at 1455.217 kb on - strand, within RR42_RS27200at 1455.217 kb on - strand, within RR42_RS27200at 1455.217 kb on - strand, within RR42_RS27200at 1455.260 kb on + strand, within RR42_RS27200at 1455.260 kb on + strand, within RR42_RS27200at 1455.261 kb on - strand, within RR42_RS27200at 1455.261 kb on - strand, within RR42_RS27200at 1455.664 kb on - strandat 1455.673 kb on + strandat 1455.860 kb on + strand, within RR42_RS27205at 1455.875 kb on + strand, within RR42_RS27205at 1456.043 kb on + strand, within RR42_RS27205at 1456.043 kb on + strand, within RR42_RS27205at 1456.092 kb on - strand, within RR42_RS27205at 1456.142 kb on + strand, within RR42_RS27205at 1456.143 kb on - strand, within RR42_RS27205at 1456.143 kb on - strand, within RR42_RS27205at 1456.143 kb on - strand, within RR42_RS27205at 1456.143 kb on - strand, within RR42_RS27205at 1456.212 kb on - strand, within RR42_RS27205at 1456.309 kb on + strand, within RR42_RS27205at 1456.310 kb on - strand, within RR42_RS27205at 1456.379 kb on + strand, within RR42_RS27205at 1456.382 kb on + strand, within RR42_RS27205at 1456.382 kb on + strand, within RR42_RS27205at 1456.446 kb on - strandat 1456.457 kb on + strandat 1456.457 kb on + strandat 1456.458 kb on - strandat 1456.616 kb on - strand, within RR42_RS27210

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,453,786 + RR42_RS27195 0.16 -0.5
1,453,786 + RR42_RS27195 0.16 +0.6
1,453,787 - RR42_RS27195 0.16 +0.7
1,453,824 + RR42_RS27195 0.20 +1.0
1,453,825 - RR42_RS27195 0.20 -0.5
1,454,084 - RR42_RS27195 0.49 +0.6
1,454,162 + RR42_RS27195 0.58 +0.8
1,454,162 + RR42_RS27195 0.58 -0.1
1,454,162 + RR42_RS27195 0.58 +0.9
1,454,162 + RR42_RS27195 0.58 -0.7
1,454,162 + RR42_RS27195 0.58 +0.1
1,454,162 + RR42_RS27195 0.58 -0.1
1,454,162 + RR42_RS27195 0.58 -0.1
1,454,162 + RR42_RS27195 0.58 -0.7
1,454,162 + RR42_RS27195 0.58 -0.0
1,454,162 + RR42_RS27195 0.58 -0.1
1,454,162 + RR42_RS27195 0.58 -0.7
1,454,163 - RR42_RS27195 0.58 -1.3
1,454,163 - RR42_RS27195 0.58 -0.0
1,454,163 - RR42_RS27195 0.58 -0.3
1,454,163 - RR42_RS27195 0.58 +0.8
1,454,163 - RR42_RS27195 0.58 -1.0
1,454,163 - RR42_RS27195 0.58 +0.9
1,454,163 - RR42_RS27195 0.58 -0.1
1,454,163 - RR42_RS27195 0.58 +0.1
1,454,163 - RR42_RS27195 0.58 -1.3
1,454,163 - RR42_RS27195 0.58 -0.4
1,454,163 - RR42_RS27195 0.58 +0.5
1,454,163 - RR42_RS27195 0.58 -0.4
1,454,163 - RR42_RS27195 0.58 -1.4
1,454,163 - RR42_RS27195 0.58 -0.3
1,454,253 - RR42_RS27195 0.68 -0.3
1,454,465 + -0.7
1,454,466 - +0.5
1,454,564 - -0.1
1,454,584 - +0.9
1,454,584 - -0.5
1,454,778 + RR42_RS27200 0.11 +0.3
1,454,778 + RR42_RS27200 0.11 +1.1
1,454,779 - RR42_RS27200 0.12 +1.8
1,454,928 + RR42_RS27200 0.27 +1.0
1,454,929 - RR42_RS27200 0.27 +1.7
1,455,129 + RR42_RS27200 0.48 -0.5
1,455,129 + RR42_RS27200 0.48 +1.1
1,455,129 + RR42_RS27200 0.48 +0.5
1,455,216 + RR42_RS27200 0.56 +0.5
1,455,217 - RR42_RS27200 0.57 -3.0
1,455,217 - RR42_RS27200 0.57 +0.9
1,455,217 - RR42_RS27200 0.57 +3.2
1,455,217 - RR42_RS27200 0.57 -0.4
1,455,260 + RR42_RS27200 0.61 -0.5
1,455,260 + RR42_RS27200 0.61 +0.7
1,455,261 - RR42_RS27200 0.61 -0.6
1,455,261 - RR42_RS27200 0.61 +1.2
1,455,664 - +1.1
1,455,673 + +0.4
1,455,860 + RR42_RS27205 0.15 +0.2
1,455,875 + RR42_RS27205 0.17 -0.1
1,456,043 + RR42_RS27205 0.39 +0.7
1,456,043 + RR42_RS27205 0.39 -0.3
1,456,092 - RR42_RS27205 0.46 +0.6
1,456,142 + RR42_RS27205 0.52 +1.3
1,456,143 - RR42_RS27205 0.53 +0.2
1,456,143 - RR42_RS27205 0.53 -0.1
1,456,143 - RR42_RS27205 0.53 -0.1
1,456,143 - RR42_RS27205 0.53 +0.7
1,456,212 - RR42_RS27205 0.62 +0.3
1,456,309 + RR42_RS27205 0.75 +0.4
1,456,310 - RR42_RS27205 0.75 +0.7
1,456,379 + RR42_RS27205 0.84 -0.5
1,456,382 + RR42_RS27205 0.84 -0.1
1,456,382 + RR42_RS27205 0.84 -0.0
1,456,446 - -0.5
1,456,457 + +0.5
1,456,457 + -2.4
1,456,458 - +0.3
1,456,616 - RR42_RS27210 0.17 -0.1

Or see this region's nucleotide sequence