Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25615 and RR42_RS25620 are separated by 6 nucleotides RR42_RS25620 and RR42_RS25625 are separated by 80 nucleotides RR42_RS25625 and RR42_RS25630 are separated by 161 nucleotides
RR42_RS25615: RR42_RS25615 - TetR family transcriptional regulator, at 1,090,802 to 1,091,383
_RS25615
RR42_RS25620: RR42_RS25620 - hypothetical protein, at 1,091,390 to 1,091,926
_RS25620
RR42_RS25625: RR42_RS25625 - LysR family transcriptional regulator, at 1,092,007 to 1,092,963
_RS25625
RR42_RS25630: RR42_RS25630 - transporter, at 1,093,125 to 1,094,438
_RS25630
Position (kb)
1092
1093 Strain fitness (log2 ratio)
-1
0
1 at 1091.055 kb on - strand, within RR42_RS25615 at 1091.100 kb on + strand, within RR42_RS25615 at 1091.212 kb on + strand, within RR42_RS25615 at 1091.381 kb on + strand at 1091.382 kb on - strand at 1091.382 kb on - strand at 1091.685 kb on + strand, within RR42_RS25620 at 1091.685 kb on + strand, within RR42_RS25620 at 1091.685 kb on + strand, within RR42_RS25620 at 1091.685 kb on + strand, within RR42_RS25620 at 1091.701 kb on + strand, within RR42_RS25620 at 1091.701 kb on + strand, within RR42_RS25620 at 1091.704 kb on - strand, within RR42_RS25620 at 1091.887 kb on - strand at 1091.887 kb on - strand at 1091.921 kb on + strand at 1092.083 kb on - strand at 1092.083 kb on - strand at 1092.097 kb on + strand at 1092.098 kb on - strand at 1092.098 kb on - strand at 1092.158 kb on - strand, within RR42_RS25625 at 1092.164 kb on - strand, within RR42_RS25625 at 1092.164 kb on - strand, within RR42_RS25625 at 1093.049 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 1,091,055 - RR42_RS25615 0.43 -0.5 1,091,100 + RR42_RS25615 0.51 -0.0 1,091,212 + RR42_RS25615 0.70 -0.6 1,091,381 + +0.7 1,091,382 - +1.3 1,091,382 - -0.9 1,091,685 + RR42_RS25620 0.55 -0.1 1,091,685 + RR42_RS25620 0.55 +0.6 1,091,685 + RR42_RS25620 0.55 +0.1 1,091,685 + RR42_RS25620 0.55 -1.1 1,091,701 + RR42_RS25620 0.58 -0.3 1,091,701 + RR42_RS25620 0.58 +0.2 1,091,704 - RR42_RS25620 0.58 -1.3 1,091,887 - +0.5 1,091,887 - -0.9 1,091,921 + +1.7 1,092,083 - -0.2 1,092,083 - +1.5 1,092,097 + -0.0 1,092,098 - +0.6 1,092,098 - -0.9 1,092,158 - RR42_RS25625 0.16 -0.9 1,092,164 - RR42_RS25625 0.16 -1.0 1,092,164 - RR42_RS25625 0.16 -0.6 1,093,049 - +0.5
Or see this region's nucleotide sequence