Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24665 and RR42_RS24670 are separated by 69 nucleotides RR42_RS24670 and RR42_RS24675 are separated by 323 nucleotides RR42_RS24675 and RR42_RS24680 are separated by 42 nucleotides RR42_RS24680 and RR42_RS24685 are separated by 39 nucleotides RR42_RS24685 and RR42_RS24690 are separated by 41 nucleotides
RR42_RS24665: RR42_RS24665 - hypothetical protein, at 871,881 to 872,990
_RS24665
RR42_RS24670: RR42_RS24670 - hypothetical protein, at 873,060 to 873,617
_RS24670
RR42_RS24675: RR42_RS24675 - hypothetical protein, at 873,941 to 875,110
_RS24675
RR42_RS24680: RR42_RS24680 - hypothetical protein, at 875,153 to 875,704
_RS24680
RR42_RS24685: RR42_RS24685 - hypothetical protein, at 875,744 to 876,016
_RS24685
RR42_RS24690: RR42_RS24690 - hypothetical protein, at 876,058 to 876,303
_RS24690
Position (kb) 873
874
875
876 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 872.990 kb on + strand at 872.990 kb on + strand at 872.991 kb on - strand at 873.061 kb on + strand at 873.223 kb on + strand, within RR42_RS24670 at 873.224 kb on - strand, within RR42_RS24670 at 873.224 kb on - strand, within RR42_RS24670 at 873.224 kb on - strand, within RR42_RS24670 at 873.224 kb on - strand, within RR42_RS24670 at 873.290 kb on + strand, within RR42_RS24670 at 873.290 kb on + strand, within RR42_RS24670 at 873.291 kb on - strand, within RR42_RS24670 at 873.291 kb on - strand, within RR42_RS24670 at 873.291 kb on - strand, within RR42_RS24670 at 873.323 kb on + strand, within RR42_RS24670 at 873.324 kb on - strand, within RR42_RS24670 at 873.324 kb on - strand, within RR42_RS24670 at 873.324 kb on - strand, within RR42_RS24670 at 873.475 kb on + strand, within RR42_RS24670 at 873.555 kb on + strand, within RR42_RS24670 at 873.556 kb on - strand, within RR42_RS24670 at 873.605 kb on + strand at 873.606 kb on - strand at 873.692 kb on + strand at 873.692 kb on + strand at 873.692 kb on + strand at 873.692 kb on + strand at 873.701 kb on + strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.851 kb on - strand at 873.946 kb on + strand at 874.256 kb on + strand, within RR42_RS24675 at 874.548 kb on + strand, within RR42_RS24675 at 874.549 kb on - strand, within RR42_RS24675 at 874.549 kb on - strand at 874.647 kb on - strand, within RR42_RS24675 at 874.725 kb on + strand, within RR42_RS24675 at 874.725 kb on + strand, within RR42_RS24675 at 874.726 kb on - strand, within RR42_RS24675 at 875.019 kb on - strand at 875.117 kb on + strand at 875.117 kb on + strand at 875.117 kb on + strand at 875.118 kb on - strand at 875.128 kb on + strand at 875.218 kb on + strand, within RR42_RS24680 at 875.219 kb on - strand, within RR42_RS24680 at 875.636 kb on - strand, within RR42_RS24680 at 875.646 kb on + strand, within RR42_RS24680 at 875.647 kb on - strand, within RR42_RS24680 at 875.647 kb on - strand, within RR42_RS24680 at 875.658 kb on + strand at 875.698 kb on + strand at 875.699 kb on - strand at 875.837 kb on - strand, within RR42_RS24685 at 875.867 kb on + strand, within RR42_RS24685 at 875.956 kb on - strand, within RR42_RS24685
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 872,990 + +0.2 872,990 + +0.7 872,991 - -0.3 873,061 + -0.5 873,223 + RR42_RS24670 0.29 -0.7 873,224 - RR42_RS24670 0.29 -0.1 873,224 - RR42_RS24670 0.29 -0.6 873,224 - RR42_RS24670 0.29 +0.2 873,224 - RR42_RS24670 0.29 -0.0 873,290 + RR42_RS24670 0.41 -0.7 873,290 + RR42_RS24670 0.41 -0.3 873,291 - RR42_RS24670 0.41 -1.3 873,291 - RR42_RS24670 0.41 -0.6 873,291 - RR42_RS24670 0.41 -1.9 873,323 + RR42_RS24670 0.47 +0.6 873,324 - RR42_RS24670 0.47 -0.7 873,324 - RR42_RS24670 0.47 -0.6 873,324 - RR42_RS24670 0.47 -0.6 873,475 + RR42_RS24670 0.74 -0.6 873,555 + RR42_RS24670 0.89 -0.6 873,556 - RR42_RS24670 0.89 -0.9 873,605 + -1.3 873,606 - -2.0 873,692 + +0.7 873,692 + -0.8 873,692 + -0.4 873,692 + -0.6 873,701 + +0.7 873,702 - -0.3 873,702 - -1.2 873,702 - -0.9 873,702 - +0.4 873,702 - -0.3 873,702 - +0.7 873,851 - -0.8 873,946 + -0.5 874,256 + RR42_RS24675 0.27 -1.9 874,548 + RR42_RS24675 0.52 -0.3 874,549 - RR42_RS24675 0.52 +0.2 874,549 - -0.3 874,647 - RR42_RS24675 0.60 -0.8 874,725 + RR42_RS24675 0.67 +0.4 874,725 + RR42_RS24675 0.67 +0.4 874,726 - RR42_RS24675 0.67 +0.1 875,019 - +0.1 875,117 + -0.1 875,117 + +0.7 875,117 + +0.5 875,118 - +2.9 875,128 + -0.3 875,218 + RR42_RS24680 0.12 +0.3 875,219 - RR42_RS24680 0.12 -0.3 875,636 - RR42_RS24680 0.88 -0.2 875,646 + RR42_RS24680 0.89 -1.6 875,647 - RR42_RS24680 0.89 +0.1 875,647 - RR42_RS24680 0.89 -0.6 875,658 + +0.4 875,698 + -0.1 875,699 - +0.3 875,837 - RR42_RS24685 0.34 -0.2 875,867 + RR42_RS24685 0.45 +0.3 875,956 - RR42_RS24685 0.78 +0.7
Or see this region's nucleotide sequence