Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22630 and RR42_RS22635 are separated by 207 nucleotides RR42_RS22635 and RR42_RS22640 are separated by 94 nucleotides
RR42_RS22630: RR42_RS22630 - 3-hydroxyacyl-CoA dehydrogenase, at 409,709 to 411,799
_RS22630
RR42_RS22635: RR42_RS22635 - membrane protein, at 412,007 to 413,080
_RS22635
RR42_RS22640: RR42_RS22640 - CAAX amino protease, at 413,175 to 413,963
_RS22640
Position (kb) 412
413
414 Strain fitness (log2 ratio) -2
-1
0
1
2 at 411.164 kb on + strand, within RR42_RS22630 at 411.286 kb on + strand, within RR42_RS22630 at 411.286 kb on + strand, within RR42_RS22630 at 411.287 kb on - strand, within RR42_RS22630 at 411.404 kb on + strand, within RR42_RS22630 at 411.407 kb on + strand, within RR42_RS22630 at 411.614 kb on + strand at 411.614 kb on + strand at 411.614 kb on + strand at 411.867 kb on - strand at 411.867 kb on - strand at 411.872 kb on - strand at 412.341 kb on - strand, within RR42_RS22635 at 412.552 kb on + strand, within RR42_RS22635 at 412.552 kb on + strand, within RR42_RS22635 at 412.553 kb on - strand, within RR42_RS22635 at 412.562 kb on + strand, within RR42_RS22635 at 412.943 kb on - strand, within RR42_RS22635 at 412.994 kb on + strand at 412.994 kb on + strand at 412.995 kb on - strand at 413.078 kb on + strand at 413.079 kb on - strand at 413.079 kb on - strand at 413.392 kb on + strand, within RR42_RS22640 at 413.392 kb on + strand, within RR42_RS22640 at 413.393 kb on - strand, within RR42_RS22640 at 413.440 kb on + strand, within RR42_RS22640 at 413.441 kb on - strand, within RR42_RS22640 at 413.441 kb on - strand, within RR42_RS22640 at 413.480 kb on - strand, within RR42_RS22640 at 413.780 kb on - strand, within RR42_RS22640 at 413.780 kb on - strand, within RR42_RS22640 at 413.824 kb on + strand, within RR42_RS22640 at 413.908 kb on - strand at 414.010 kb on + strand at 414.010 kb on + strand at 414.033 kb on - strand at 414.074 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 411,164 + RR42_RS22630 0.70 -0.2 411,286 + RR42_RS22630 0.75 -0.1 411,286 + RR42_RS22630 0.75 +0.8 411,287 - RR42_RS22630 0.75 -0.4 411,404 + RR42_RS22630 0.81 +0.2 411,407 + RR42_RS22630 0.81 +0.5 411,614 + +2.3 411,614 + -0.9 411,614 + -2.5 411,867 - -0.7 411,867 - -1.6 411,872 - +1.4 412,341 - RR42_RS22635 0.31 +0.4 412,552 + RR42_RS22635 0.51 +0.3 412,552 + RR42_RS22635 0.51 +0.7 412,553 - RR42_RS22635 0.51 +0.7 412,562 + RR42_RS22635 0.52 +0.7 412,943 - RR42_RS22635 0.87 -0.2 412,994 + +0.0 412,994 + +2.4 412,995 - -2.1 413,078 + -0.5 413,079 - +0.7 413,079 - -0.5 413,392 + RR42_RS22640 0.28 +0.2 413,392 + RR42_RS22640 0.28 +0.1 413,393 - RR42_RS22640 0.28 -0.2 413,440 + RR42_RS22640 0.34 +0.0 413,441 - RR42_RS22640 0.34 +0.1 413,441 - RR42_RS22640 0.34 +0.4 413,480 - RR42_RS22640 0.39 +0.3 413,780 - RR42_RS22640 0.77 -0.6 413,780 - RR42_RS22640 0.77 +0.1 413,824 + RR42_RS22640 0.82 +0.6 413,908 - +0.5 414,010 + +0.5 414,010 + +0.9 414,033 - +0.1 414,074 + +1.2
Or see this region's nucleotide sequence