Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22055 and RR42_RS22060 are separated by 158 nucleotides RR42_RS22060 and RR42_RS22065 are separated by 25 nucleotides RR42_RS22065 and RR42_RS22070 are separated by 233 nucleotides
RR42_RS22055: RR42_RS22055 - type VI secretion protein, at 281,355 to 282,662
_RS22055
RR42_RS22060: RR42_RS22060 - type VI secretion protein EvpB, at 282,821 to 284,368
_RS22060
RR42_RS22065: RR42_RS22065 - type VI secretion protein, at 284,394 to 284,909
_RS22065
RR42_RS22070: RR42_RS22070 - type IV secretion protein Rhs, at 285,143 to 287,623
_RS22070
Position (kb) 282
283
284
285 Strain fitness (log2 ratio) -2
-1
0
1
2 at 281.828 kb on - strand, within RR42_RS22055 at 281.960 kb on + strand, within RR42_RS22055 at 281.960 kb on + strand, within RR42_RS22055 at 281.961 kb on - strand, within RR42_RS22055 at 281.961 kb on - strand, within RR42_RS22055 at 281.961 kb on - strand, within RR42_RS22055 at 282.211 kb on + strand, within RR42_RS22055 at 282.211 kb on + strand, within RR42_RS22055 at 282.212 kb on - strand, within RR42_RS22055 at 282.212 kb on - strand, within RR42_RS22055 at 282.212 kb on - strand, within RR42_RS22055 at 282.212 kb on - strand, within RR42_RS22055 at 282.693 kb on + strand at 282.782 kb on + strand at 282.783 kb on - strand at 282.783 kb on - strand at 283.135 kb on - strand, within RR42_RS22060 at 283.245 kb on + strand, within RR42_RS22060 at 283.248 kb on + strand, within RR42_RS22060 at 283.248 kb on + strand, within RR42_RS22060 at 283.350 kb on + strand, within RR42_RS22060 at 283.351 kb on - strand, within RR42_RS22060 at 283.351 kb on - strand, within RR42_RS22060 at 283.515 kb on + strand, within RR42_RS22060 at 283.594 kb on - strand, within RR42_RS22060 at 283.594 kb on - strand, within RR42_RS22060 at 283.594 kb on - strand, within RR42_RS22060 at 283.594 kb on - strand, within RR42_RS22060 at 283.594 kb on - strand, within RR42_RS22060 at 283.635 kb on + strand, within RR42_RS22060 at 283.738 kb on + strand, within RR42_RS22060 at 283.739 kb on - strand, within RR42_RS22060 at 283.766 kb on - strand, within RR42_RS22060 at 283.867 kb on - strand, within RR42_RS22060 at 284.289 kb on + strand at 284.396 kb on - strand at 284.788 kb on + strand, within RR42_RS22065 at 284.789 kb on - strand, within RR42_RS22065 at 284.865 kb on - strand at 284.971 kb on - strand at 284.988 kb on + strand at 284.988 kb on + strand at 285.013 kb on + strand at 285.013 kb on + strand at 285.018 kb on - strand at 285.027 kb on - strand at 285.078 kb on + strand at 285.170 kb on + strand at 285.210 kb on - strand at 285.210 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 281,828 - RR42_RS22055 0.36 -1.7 281,960 + RR42_RS22055 0.46 +0.2 281,960 + RR42_RS22055 0.46 +0.3 281,961 - RR42_RS22055 0.46 +0.0 281,961 - RR42_RS22055 0.46 +0.2 281,961 - RR42_RS22055 0.46 -0.2 282,211 + RR42_RS22055 0.65 +0.5 282,211 + RR42_RS22055 0.65 +0.5 282,212 - RR42_RS22055 0.66 +0.2 282,212 - RR42_RS22055 0.66 -0.2 282,212 - RR42_RS22055 0.66 -0.2 282,212 - RR42_RS22055 0.66 +0.0 282,693 + -0.1 282,782 + -2.0 282,783 - +0.7 282,783 - -0.6 283,135 - RR42_RS22060 0.20 -1.0 283,245 + RR42_RS22060 0.27 +1.1 283,248 + RR42_RS22060 0.28 -0.1 283,248 + RR42_RS22060 0.28 +0.5 283,350 + RR42_RS22060 0.34 -0.6 283,351 - RR42_RS22060 0.34 -0.2 283,351 - RR42_RS22060 0.34 -0.4 283,515 + RR42_RS22060 0.45 -1.8 283,594 - RR42_RS22060 0.50 -1.2 283,594 - RR42_RS22060 0.50 -0.3 283,594 - RR42_RS22060 0.50 -0.9 283,594 - RR42_RS22060 0.50 +1.5 283,594 - RR42_RS22060 0.50 +0.2 283,635 + RR42_RS22060 0.53 +0.2 283,738 + RR42_RS22060 0.59 +0.2 283,739 - RR42_RS22060 0.59 -0.2 283,766 - RR42_RS22060 0.61 +0.6 283,867 - RR42_RS22060 0.68 -0.2 284,289 + -0.1 284,396 - -1.3 284,788 + RR42_RS22065 0.76 -0.6 284,789 - RR42_RS22065 0.77 -0.9 284,865 - +0.6 284,971 - -0.5 284,988 + +0.2 284,988 + +0.5 285,013 + +2.6 285,013 + +0.4 285,018 - -0.4 285,027 - -0.2 285,078 + -0.6 285,170 + -1.6 285,210 - -0.3 285,210 - -1.0
Or see this region's nucleotide sequence