Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19725 and RR42_RS19730 are separated by 129 nucleotides RR42_RS19730 and RR42_RS19735 are separated by 98 nucleotides RR42_RS19735 and RR42_RS19740 are separated by 39 nucleotides
RR42_RS19725: RR42_RS19725 - hypothetical protein, at 4,259,690 to 4,260,478
_RS19725
RR42_RS19730: RR42_RS19730 - phosphoheptose isomerase, at 4,260,608 to 4,261,195
_RS19730
RR42_RS19735: RR42_RS19735 - hypothetical protein, at 4,261,294 to 4,261,662
_RS19735
RR42_RS19740: RR42_RS19740 - 16S rRNA methyltransferase, at 4,261,702 to 4,262,625
_RS19740
Position (kb) 4260
4261
4262 Strain fitness (log2 ratio) -1
0
1
2 at 4259.895 kb on + strand, within RR42_RS19725 at 4259.895 kb on + strand, within RR42_RS19725 at 4259.895 kb on + strand, within RR42_RS19725 at 4259.895 kb on + strand, within RR42_RS19725 at 4260.167 kb on + strand, within RR42_RS19725 at 4260.167 kb on + strand, within RR42_RS19725 at 4260.167 kb on + strand, within RR42_RS19725 at 4260.167 kb on + strand, within RR42_RS19725 at 4260.167 kb on + strand, within RR42_RS19725 at 4260.168 kb on - strand, within RR42_RS19725 at 4260.168 kb on - strand, within RR42_RS19725 at 4260.168 kb on - strand, within RR42_RS19725 at 4260.168 kb on - strand, within RR42_RS19725 at 4260.171 kb on + strand, within RR42_RS19725 at 4260.171 kb on + strand, within RR42_RS19725 at 4260.171 kb on + strand, within RR42_RS19725 at 4260.172 kb on - strand, within RR42_RS19725 at 4260.172 kb on - strand, within RR42_RS19725 at 4260.172 kb on - strand, within RR42_RS19725 at 4260.609 kb on + strand at 4260.916 kb on - strand, within RR42_RS19730 at 4261.189 kb on + strand at 4261.189 kb on + strand at 4261.189 kb on + strand at 4261.190 kb on - strand at 4261.190 kb on - strand at 4261.235 kb on - strand at 4261.263 kb on + strand at 4261.478 kb on + strand, within RR42_RS19735 at 4261.478 kb on + strand, within RR42_RS19735 at 4261.479 kb on - strand, within RR42_RS19735 at 4261.479 kb on - strand, within RR42_RS19735 at 4261.479 kb on - strand, within RR42_RS19735 at 4261.572 kb on - strand, within RR42_RS19735 at 4261.756 kb on + strand at 4261.756 kb on + strand at 4261.756 kb on + strand at 4261.756 kb on + strand at 4261.756 kb on + strand at 4261.757 kb on - strand at 4261.757 kb on - strand at 4261.757 kb on - strand at 4261.757 kb on - strand at 4261.815 kb on - strand, within RR42_RS19740 at 4261.917 kb on + strand, within RR42_RS19740 at 4261.979 kb on - strand, within RR42_RS19740 at 4261.979 kb on - strand, within RR42_RS19740 at 4261.979 kb on - strand, within RR42_RS19740 at 4261.979 kb on - strand, within RR42_RS19740 at 4261.979 kb on - strand, within RR42_RS19740
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 4,259,895 + RR42_RS19725 0.26 +0.8 4,259,895 + RR42_RS19725 0.26 +0.2 4,259,895 + RR42_RS19725 0.26 -0.4 4,259,895 + RR42_RS19725 0.26 -0.4 4,260,167 + RR42_RS19725 0.60 +1.2 4,260,167 + RR42_RS19725 0.60 +0.1 4,260,167 + RR42_RS19725 0.60 -0.2 4,260,167 + RR42_RS19725 0.60 +1.3 4,260,167 + RR42_RS19725 0.60 +1.0 4,260,168 - RR42_RS19725 0.61 +1.0 4,260,168 - RR42_RS19725 0.61 +0.9 4,260,168 - RR42_RS19725 0.61 -1.2 4,260,168 - RR42_RS19725 0.61 +0.2 4,260,171 + RR42_RS19725 0.61 +0.8 4,260,171 + RR42_RS19725 0.61 +0.1 4,260,171 + RR42_RS19725 0.61 +0.2 4,260,172 - RR42_RS19725 0.61 -0.8 4,260,172 - RR42_RS19725 0.61 -0.4 4,260,172 - RR42_RS19725 0.61 -0.7 4,260,609 + -0.0 4,260,916 - RR42_RS19730 0.52 +1.5 4,261,189 + -1.0 4,261,189 + +0.3 4,261,189 + +0.1 4,261,190 - -0.8 4,261,190 - +0.7 4,261,235 - -0.1 4,261,263 + -0.0 4,261,478 + RR42_RS19735 0.50 +0.2 4,261,478 + RR42_RS19735 0.50 +0.7 4,261,479 - RR42_RS19735 0.50 +0.7 4,261,479 - RR42_RS19735 0.50 +1.4 4,261,479 - RR42_RS19735 0.50 -0.5 4,261,572 - RR42_RS19735 0.75 -1.6 4,261,756 + -0.6 4,261,756 + +0.4 4,261,756 + +0.8 4,261,756 + -1.6 4,261,756 + +0.9 4,261,757 - -1.3 4,261,757 - +0.1 4,261,757 - +1.9 4,261,757 - +0.5 4,261,815 - RR42_RS19740 0.12 -0.2 4,261,917 + RR42_RS19740 0.23 -1.5 4,261,979 - RR42_RS19740 0.30 -1.1 4,261,979 - RR42_RS19740 0.30 +0.3 4,261,979 - RR42_RS19740 0.30 -0.3 4,261,979 - RR42_RS19740 0.30 -0.3 4,261,979 - RR42_RS19740 0.30 -0.6
Or see this region's nucleotide sequence