Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19040 and RR42_RS19045 are separated by 82 nucleotides RR42_RS19045 and RR42_RS19050 are separated by 420 nucleotides RR42_RS19050 and RR42_RS19055 are separated by 214 nucleotides RR42_RS19055 and RR42_RS19060 are separated by 14 nucleotides
RR42_RS19040: RR42_RS19040 - penicillin-binding protein, at 4,124,407 to 4,126,779
_RS19040
RR42_RS19045: RR42_RS19045 - frataxin, at 4,126,862 to 4,127,197
_RS19045
RR42_RS19050: RR42_RS19050 - diaminopimelate decarboxylase, at 4,127,618 to 4,128,886
_RS19050
RR42_RS19055: RR42_RS19055 - sulfite oxidase, at 4,129,101 to 4,129,781
_RS19055
RR42_RS19060: RR42_RS19060 - sulfoxide reductase catalytic subunit YedY, at 4,129,796 to 4,130,797
_RS19060
Position (kb) 4127
4128
4129 Strain fitness (log2 ratio) -1
0
1 at 4126.911 kb on - strand, within RR42_RS19045 at 4127.230 kb on + strand at 4127.240 kb on + strand at 4127.260 kb on + strand at 4127.260 kb on + strand at 4127.351 kb on + strand at 4127.351 kb on + strand at 4127.491 kb on + strand at 4127.613 kb on + strand at 4128.884 kb on + strand at 4129.089 kb on + strand at 4129.089 kb on + strand at 4129.089 kb on + strand at 4129.090 kb on - strand at 4129.090 kb on - strand at 4129.090 kb on - strand at 4129.102 kb on + strand at 4129.103 kb on - strand at 4129.103 kb on - strand at 4129.103 kb on - strand at 4129.103 kb on - strand at 4129.183 kb on + strand, within RR42_RS19055 at 4129.191 kb on + strand, within RR42_RS19055 at 4129.220 kb on + strand, within RR42_RS19055 at 4129.220 kb on + strand, within RR42_RS19055 at 4129.220 kb on + strand, within RR42_RS19055 at 4129.220 kb on + strand, within RR42_RS19055 at 4129.221 kb on - strand, within RR42_RS19055 at 4129.231 kb on + strand, within RR42_RS19055 at 4129.231 kb on + strand, within RR42_RS19055 at 4129.231 kb on + strand, within RR42_RS19055 at 4129.231 kb on + strand, within RR42_RS19055 at 4129.231 kb on + strand, within RR42_RS19055 at 4129.232 kb on - strand, within RR42_RS19055 at 4129.232 kb on - strand, within RR42_RS19055 at 4129.232 kb on - strand, within RR42_RS19055 at 4129.261 kb on + strand, within RR42_RS19055 at 4129.261 kb on + strand, within RR42_RS19055 at 4129.261 kb on + strand, within RR42_RS19055 at 4129.261 kb on + strand, within RR42_RS19055 at 4129.300 kb on - strand, within RR42_RS19055 at 4129.408 kb on + strand, within RR42_RS19055 at 4129.408 kb on + strand, within RR42_RS19055 at 4129.408 kb on + strand, within RR42_RS19055 at 4129.408 kb on + strand, within RR42_RS19055 at 4129.408 kb on + strand, within RR42_RS19055 at 4129.409 kb on - strand, within RR42_RS19055 at 4129.465 kb on + strand, within RR42_RS19055 at 4129.465 kb on + strand, within RR42_RS19055 at 4129.465 kb on + strand, within RR42_RS19055 at 4129.827 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 4,126,911 - RR42_RS19045 0.15 -0.1 4,127,230 + -0.3 4,127,240 + +0.2 4,127,260 + +1.5 4,127,260 + +1.1 4,127,351 + -0.2 4,127,351 + -0.6 4,127,491 + -0.0 4,127,613 + -0.6 4,128,884 + -0.2 4,129,089 + +0.2 4,129,089 + -1.2 4,129,089 + +0.0 4,129,090 - +0.5 4,129,090 - +0.6 4,129,090 - -0.8 4,129,102 + -0.6 4,129,103 - -0.4 4,129,103 - +0.0 4,129,103 - -0.5 4,129,103 - -0.4 4,129,183 + RR42_RS19055 0.12 -0.2 4,129,191 + RR42_RS19055 0.13 +0.0 4,129,220 + RR42_RS19055 0.17 +0.3 4,129,220 + RR42_RS19055 0.17 +0.2 4,129,220 + RR42_RS19055 0.17 +0.5 4,129,220 + RR42_RS19055 0.17 +0.3 4,129,221 - RR42_RS19055 0.18 -0.6 4,129,231 + RR42_RS19055 0.19 +0.5 4,129,231 + RR42_RS19055 0.19 -0.6 4,129,231 + RR42_RS19055 0.19 -0.4 4,129,231 + RR42_RS19055 0.19 -0.8 4,129,231 + RR42_RS19055 0.19 +0.6 4,129,232 - RR42_RS19055 0.19 -0.1 4,129,232 - RR42_RS19055 0.19 +0.2 4,129,232 - RR42_RS19055 0.19 -0.8 4,129,261 + RR42_RS19055 0.23 +0.9 4,129,261 + RR42_RS19055 0.23 -1.1 4,129,261 + RR42_RS19055 0.23 -1.1 4,129,261 + RR42_RS19055 0.23 +0.4 4,129,300 - RR42_RS19055 0.29 -0.3 4,129,408 + RR42_RS19055 0.45 +0.7 4,129,408 + RR42_RS19055 0.45 -0.6 4,129,408 + RR42_RS19055 0.45 +0.8 4,129,408 + RR42_RS19055 0.45 -0.1 4,129,408 + RR42_RS19055 0.45 +0.2 4,129,409 - RR42_RS19055 0.45 +0.4 4,129,465 + RR42_RS19055 0.53 +0.8 4,129,465 + RR42_RS19055 0.53 +0.0 4,129,465 + RR42_RS19055 0.53 +0.3 4,129,827 + -0.3
Or see this region's nucleotide sequence