Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13880

Experiment: L-Histidine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Histidine (C)
2,989,613	-		RR42_RS13875	0.59	-0.3
2,989,616	-		RR42_RS13875	0.59	+1.0
2,989,693	+		RR42_RS13875	0.63	+0.1
2,989,693	+		RR42_RS13875	0.63	-0.8
2,989,693	+		RR42_RS13875	0.63	+0.8
2,989,693	+		RR42_RS13875	0.63	+0.7
2,989,694	-		RR42_RS13875	0.63	-1.0
2,989,694	-		RR42_RS13875	0.63	-2.0
2,989,694	-		RR42_RS13875	0.63	+1.2
2,989,694	-		RR42_RS13875	0.63	-0.5
2,989,777	+		RR42_RS13875	0.67	+1.0
2,989,777	+		RR42_RS13875	0.67	-0.8
2,989,777	+		RR42_RS13875	0.67	+0.0
2,989,778	-		RR42_RS13875	0.67	+1.0
2,989,906	-		RR42_RS13875	0.73	+0.3
2,989,944	+		RR42_RS13875	0.75	-0.2
2,989,944	+		RR42_RS13875	0.75	-0.2
2,989,944	+		RR42_RS13875	0.75	+0.6
2,989,945	-		RR42_RS13875	0.75	+0.2
2,990,039	-		RR42_RS13875	0.80	-0.6
2,990,060	-		RR42_RS13875	0.81	+0.4
2,990,090	-		RR42_RS13875	0.82	-0.6
2,990,129	-		RR42_RS13875	0.84	-1.0
2,990,235	+		RR42_RS13875	0.89	-0.3
2,990,235	+		RR42_RS13875	0.89	+0.0
2,990,236	-		RR42_RS13875	0.90	-0.6
2,990,236	-		RR42_RS13875	0.90	-0.5
2,990,239	+		RR42_RS13875	0.90	+0.0
2,990,239	+		RR42_RS13875	0.90	+2.2
2,990,239	+		RR42_RS13875	0.90	-2.3
2,990,239	+		RR42_RS13875	0.90	+1.6
2,990,239	+		RR42_RS13875	0.90	+0.1
2,990,240	-		RR42_RS13875	0.90	+0.4
2,990,240	-		RR42_RS13875	0.90	+0.6
2,990,240	-		RR42_RS13875	0.90	-0.6
2,990,240	-		RR42_RS13875	0.90	+0.3
2,990,240	-		RR42_RS13875	0.90	+1.0
2,990,240	-		RR42_RS13875	0.90	+0.9
2,990,240	-		RR42_RS13875	0.90	+0.3
2,990,240	-		RR42_RS13875	0.90	-0.6
2,990,240	-		RR42_RS13875	0.90	+0.1
2,990,242	+		RR42_RS13875	0.90	-0.4
2,990,242	+		RR42_RS13875	0.90	+0.2
2,990,242	+		RR42_RS13875	0.90	+1.0
2,990,243	-		RR42_RS13875	0.90	+0.2
2,990,243	-		RR42_RS13875	0.90	-0.4
2,990,243	-		RR42_RS13875	0.90	+0.2
2,990,243	-		RR42_RS13875	0.90	-0.1
2,990,287	+				-0.6
2,990,287	+				+0.6
2,990,287	+				-0.4
2,990,288	-				+0.5
2,990,288	-				+0.3
2,990,288	-				-0.1
2,990,317	+				-0.2
2,990,372	+				-1.4
2,990,405	-				+1.0
2,990,407	+				-0.2
2,990,408	-				+0.6
2,990,970	+		RR42_RS13880	0.21	-0.5
2,991,012	+		RR42_RS13880	0.23	-0.4
2,991,012	+		RR42_RS13880	0.23	-0.3
2,991,012	+		RR42_RS13880	0.23	-2.6
2,991,013	-		RR42_RS13880	0.23	-0.3
2,991,013	-		RR42_RS13880	0.23	-1.0
2,991,013	-		RR42_RS13880	0.23	-0.5
2,991,013	-		RR42_RS13880	0.23	-0.9
2,991,042	+		RR42_RS13880	0.25	-1.2
2,991,043	-		RR42_RS13880	0.25	-1.0
2,991,043	-		RR42_RS13880	0.25	-0.6
2,991,043	-		RR42_RS13880	0.25	-0.6
2,991,175	+		RR42_RS13880	0.31	-0.4
2,991,309	+		RR42_RS13880	0.38	-0.6
2,991,309	+		RR42_RS13880	0.38	-0.3
2,991,310	-		RR42_RS13880	0.38	-0.7
2,991,310	-		RR42_RS13880	0.38	-2.0
2,991,312	+		RR42_RS13880	0.38	-1.3
2,991,312	+		RR42_RS13880	0.38	-1.0
2,991,312	+		RR42_RS13880	0.38	+0.7
2,991,312	+		RR42_RS13880	0.38	-0.8
2,991,313	-		RR42_RS13880	0.38	+0.2
2,991,313	-		RR42_RS13880	0.38	-2.9
2,991,381	+		RR42_RS13880	0.42	-0.2
2,991,382	-		RR42_RS13880	0.42	-1.0
2,991,453	+		RR42_RS13880	0.45	+0.7
2,991,453	+		RR42_RS13880	0.45	-3.1
2,991,511	-		RR42_RS13880	0.48	-1.1
2,991,511	-		RR42_RS13880	0.48	-1.4
2,991,573	+		RR42_RS13880	0.51	-0.9
2,991,573	+		RR42_RS13880	0.51	+1.0
2,991,573	+		RR42_RS13880	0.51	-0.7
2,991,573	+		RR42_RS13880	0.51	-3.0
2,991,574	-		RR42_RS13880	0.52	+0.8
2,991,574	-		RR42_RS13880	0.52	-1.3
2,991,574	-		RR42_RS13880	0.52	-0.4
2,991,574	-		RR42_RS13880	0.52	-1.5
2,991,574	-		RR42_RS13880	0.52	-1.1
2,991,574	-		RR42_RS13880	0.52	-2.0
2,991,574	-		RR42_RS13880	0.52	+0.4
2,991,574	-		RR42_RS13880	0.52	-0.7
2,991,676	-		RR42_RS13880	0.57	-1.4
2,991,729	+		RR42_RS13880	0.59	-0.3
2,992,104	+		RR42_RS13880	0.78	-2.4
2,992,104	+		RR42_RS13880	0.78	-0.7
2,992,104	+		RR42_RS13880	0.78	-1.1
2,992,105	-		RR42_RS13880	0.78	-0.9
2,992,105	-		RR42_RS13880	0.78	-0.9
2,992,105	-		RR42_RS13880	0.78	+0.0
2,992,105	-		RR42_RS13880	0.78	-0.9
2,992,105	-		RR42_RS13880	0.78	-2.0
2,992,105	-		RR42_RS13880	0.78	-0.7
2,992,188	+		RR42_RS13880	0.83	-0.9
2,992,188	+		RR42_RS13880	0.83	-1.4
2,992,188	+		RR42_RS13880	0.83	-0.6
2,992,189	-		RR42_RS13880	0.83	-0.6
2,992,235	+		RR42_RS13880	0.85	-0.4
2,992,235	+		RR42_RS13880	0.85	-1.8
2,992,236	-		RR42_RS13880	0.85	-0.9
2,992,236	-		RR42_RS13880	0.85	+0.3
2,992,280	-		RR42_RS13880	0.87	-0.9
2,992,317	+		RR42_RS13880	0.89	+0.1
2,992,318	-		RR42_RS13880	0.89	+0.4
2,992,551	-				-0.3
2,992,552	+				+0.4
2,992,552	+				-1.2
2,992,552	+				-1.1
2,992,552	+				-1.3
2,992,552	+				-0.3
2,992,553	-				-1.9
2,992,553	-				-0.7
2,992,592	-				+0.3
2,992,595	+				-1.0
2,992,596	-				-1.7
2,992,596	-				+1.5
2,992,714	+				-0.3
2,992,723	+				+0.4
2,992,723	+				+0.3
2,992,723	+				-0.3
2,992,723	+				+0.4
2,992,723	+				+0.5
2,992,724	-				+1.0
2,992,724	-				-0.9
2,992,724	-				-1.3
2,992,724	-				+0.4
2,992,724	-				+1.4
2,992,726	-				+0.2
2,992,726	-				+0.6
2,992,726	-				+2.0
2,992,741	-				+0.2
2,992,825	-				-0.2
2,993,024	+				+0.0
2,993,024	+				+0.2
2,993,024	+				+0.9
2,993,025	-				+0.2
2,993,025	-				+0.5
2,993,196	+		RR42_RS13885	0.27	-0.6
2,993,254	-		RR42_RS13885	0.33	+0.3
2,993,254	-		RR42_RS13885	0.33	-0.6
2,993,300	-		RR42_RS13885	0.38	+0.7
2,993,457	-		RR42_RS13885	0.54	-0.9
2,993,513	+		RR42_RS13885	0.60	-1.1
2,993,514	-		RR42_RS13885	0.60	-0.1
2,993,515	+		RR42_RS13885	0.61	-0.4
2,993,515	+		RR42_RS13885	0.61	-1.3
2,993,515	+		RR42_RS13885	0.61	+1.3
2,993,516	-		RR42_RS13885	0.61	+0.6