Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS12535 and RR42_RS12540 are separated by 8 nucleotides RR42_RS12540 and RR42_RS12545 are separated by 54 nucleotides
RR42_RS12535: RR42_RS12535 - threonine synthase, at 2,693,755 to 2,695,203
_RS12535
RR42_RS12540: RR42_RS12540 - homoserine dehydrogenase, at 2,695,212 to 2,696,522
_RS12540
RR42_RS12545: RR42_RS12545 - aminotransferase, at 2,696,577 to 2,697,809
_RS12545
Position (kb)
2695
2696
2697 Strain fitness (log2 ratio)
-2
-1
0
1 at 2696.606 kb on - strand at 2696.606 kb on - strand at 2696.753 kb on - strand, within RR42_RS12545 at 2696.753 kb on - strand, within RR42_RS12545 at 2696.753 kb on - strand, within RR42_RS12545 at 2696.753 kb on - strand, within RR42_RS12545 at 2696.813 kb on - strand, within RR42_RS12545 at 2696.813 kb on - strand, within RR42_RS12545 at 2696.875 kb on - strand, within RR42_RS12545 at 2697.020 kb on - strand, within RR42_RS12545 at 2697.020 kb on - strand, within RR42_RS12545 at 2697.086 kb on - strand, within RR42_RS12545 at 2697.086 kb on - strand, within RR42_RS12545 at 2697.156 kb on - strand, within RR42_RS12545 at 2697.167 kb on - strand, within RR42_RS12545 at 2697.167 kb on - strand, within RR42_RS12545 at 2697.182 kb on - strand, within RR42_RS12545 at 2697.182 kb on - strand, within RR42_RS12545 at 2697.182 kb on - strand, within RR42_RS12545 at 2697.257 kb on - strand, within RR42_RS12545 at 2697.257 kb on - strand, within RR42_RS12545 at 2697.306 kb on - strand, within RR42_RS12545 at 2697.374 kb on - strand, within RR42_RS12545 at 2697.374 kb on - strand, within RR42_RS12545 at 2697.374 kb on - strand, within RR42_RS12545 at 2697.374 kb on - strand, within RR42_RS12545 at 2697.374 kb on - strand, within RR42_RS12545 at 2697.374 kb on - strand, within RR42_RS12545 at 2697.374 kb on - strand, within RR42_RS12545 at 2697.374 kb on - strand, within RR42_RS12545 at 2697.425 kb on - strand, within RR42_RS12545 at 2697.515 kb on - strand, within RR42_RS12545 at 2697.515 kb on - strand, within RR42_RS12545 at 2697.515 kb on - strand, within RR42_RS12545 at 2697.515 kb on - strand, within RR42_RS12545 at 2697.515 kb on - strand, within RR42_RS12545 at 2697.515 kb on - strand, within RR42_RS12545
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 2,696,606 - +0.3 2,696,606 - -0.0 2,696,753 - RR42_RS12545 0.14 +0.9 2,696,753 - RR42_RS12545 0.14 -0.6 2,696,753 - RR42_RS12545 0.14 -0.4 2,696,753 - RR42_RS12545 0.14 -0.7 2,696,813 - RR42_RS12545 0.19 -0.7 2,696,813 - RR42_RS12545 0.19 -2.4 2,696,875 - RR42_RS12545 0.24 -0.3 2,697,020 - RR42_RS12545 0.36 -1.0 2,697,020 - RR42_RS12545 0.36 +0.7 2,697,086 - RR42_RS12545 0.41 -0.7 2,697,086 - RR42_RS12545 0.41 +0.8 2,697,156 - RR42_RS12545 0.47 +0.4 2,697,167 - RR42_RS12545 0.48 -0.1 2,697,167 - RR42_RS12545 0.48 -1.8 2,697,182 - RR42_RS12545 0.49 +0.2 2,697,182 - RR42_RS12545 0.49 -1.1 2,697,182 - RR42_RS12545 0.49 -0.3 2,697,257 - RR42_RS12545 0.55 -0.3 2,697,257 - RR42_RS12545 0.55 -1.5 2,697,306 - RR42_RS12545 0.59 +0.1 2,697,374 - RR42_RS12545 0.65 -0.7 2,697,374 - RR42_RS12545 0.65 -0.2 2,697,374 - RR42_RS12545 0.65 -0.9 2,697,374 - RR42_RS12545 0.65 -0.1 2,697,374 - RR42_RS12545 0.65 -1.5 2,697,374 - RR42_RS12545 0.65 -0.9 2,697,374 - RR42_RS12545 0.65 -0.2 2,697,374 - RR42_RS12545 0.65 -0.1 2,697,425 - RR42_RS12545 0.69 -0.2 2,697,515 - RR42_RS12545 0.76 +0.0 2,697,515 - RR42_RS12545 0.76 -0.2 2,697,515 - RR42_RS12545 0.76 -0.7 2,697,515 - RR42_RS12545 0.76 -1.2 2,697,515 - RR42_RS12545 0.76 -0.8 2,697,515 - RR42_RS12545 0.76 -0.5
Or see this region's nucleotide sequence