Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12540

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS12535 and RR42_RS12540 are separated by 8 nucleotidesRR42_RS12540 and RR42_RS12545 are separated by 54 nucleotides RR42_RS12535: RR42_RS12535 - threonine synthase, at 2,693,755 to 2,695,203 _RS12535 RR42_RS12540: RR42_RS12540 - homoserine dehydrogenase, at 2,695,212 to 2,696,522 _RS12540 RR42_RS12545: RR42_RS12545 - aminotransferase, at 2,696,577 to 2,697,809 _RS12545 Position (kb) 2695 2696 2697Strain fitness (log2 ratio) -2 -1 0 1at 2696.606 kb on - strandat 2696.606 kb on - strandat 2696.753 kb on - strand, within RR42_RS12545at 2696.753 kb on - strand, within RR42_RS12545at 2696.753 kb on - strand, within RR42_RS12545at 2696.753 kb on - strand, within RR42_RS12545at 2696.813 kb on - strand, within RR42_RS12545at 2696.813 kb on - strand, within RR42_RS12545at 2696.875 kb on - strand, within RR42_RS12545at 2697.020 kb on - strand, within RR42_RS12545at 2697.020 kb on - strand, within RR42_RS12545at 2697.086 kb on - strand, within RR42_RS12545at 2697.086 kb on - strand, within RR42_RS12545at 2697.156 kb on - strand, within RR42_RS12545at 2697.167 kb on - strand, within RR42_RS12545at 2697.167 kb on - strand, within RR42_RS12545at 2697.182 kb on - strand, within RR42_RS12545at 2697.182 kb on - strand, within RR42_RS12545at 2697.182 kb on - strand, within RR42_RS12545at 2697.257 kb on - strand, within RR42_RS12545at 2697.257 kb on - strand, within RR42_RS12545at 2697.306 kb on - strand, within RR42_RS12545at 2697.374 kb on - strand, within RR42_RS12545at 2697.374 kb on - strand, within RR42_RS12545at 2697.374 kb on - strand, within RR42_RS12545at 2697.374 kb on - strand, within RR42_RS12545at 2697.374 kb on - strand, within RR42_RS12545at 2697.374 kb on - strand, within RR42_RS12545at 2697.374 kb on - strand, within RR42_RS12545at 2697.374 kb on - strand, within RR42_RS12545at 2697.425 kb on - strand, within RR42_RS12545at 2697.515 kb on - strand, within RR42_RS12545at 2697.515 kb on - strand, within RR42_RS12545at 2697.515 kb on - strand, within RR42_RS12545at 2697.515 kb on - strand, within RR42_RS12545at 2697.515 kb on - strand, within RR42_RS12545at 2697.515 kb on - strand, within RR42_RS12545

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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2,696,606 - +0.3
2,696,606 - -0.0
2,696,753 - RR42_RS12545 0.14 +0.9
2,696,753 - RR42_RS12545 0.14 -0.6
2,696,753 - RR42_RS12545 0.14 -0.4
2,696,753 - RR42_RS12545 0.14 -0.7
2,696,813 - RR42_RS12545 0.19 -0.7
2,696,813 - RR42_RS12545 0.19 -2.4
2,696,875 - RR42_RS12545 0.24 -0.3
2,697,020 - RR42_RS12545 0.36 -1.0
2,697,020 - RR42_RS12545 0.36 +0.7
2,697,086 - RR42_RS12545 0.41 -0.7
2,697,086 - RR42_RS12545 0.41 +0.8
2,697,156 - RR42_RS12545 0.47 +0.4
2,697,167 - RR42_RS12545 0.48 -0.1
2,697,167 - RR42_RS12545 0.48 -1.8
2,697,182 - RR42_RS12545 0.49 +0.2
2,697,182 - RR42_RS12545 0.49 -1.1
2,697,182 - RR42_RS12545 0.49 -0.3
2,697,257 - RR42_RS12545 0.55 -0.3
2,697,257 - RR42_RS12545 0.55 -1.5
2,697,306 - RR42_RS12545 0.59 +0.1
2,697,374 - RR42_RS12545 0.65 -0.7
2,697,374 - RR42_RS12545 0.65 -0.2
2,697,374 - RR42_RS12545 0.65 -0.9
2,697,374 - RR42_RS12545 0.65 -0.1
2,697,374 - RR42_RS12545 0.65 -1.5
2,697,374 - RR42_RS12545 0.65 -0.9
2,697,374 - RR42_RS12545 0.65 -0.2
2,697,374 - RR42_RS12545 0.65 -0.1
2,697,425 - RR42_RS12545 0.69 -0.2
2,697,515 - RR42_RS12545 0.76 +0.0
2,697,515 - RR42_RS12545 0.76 -0.2
2,697,515 - RR42_RS12545 0.76 -0.7
2,697,515 - RR42_RS12545 0.76 -1.2
2,697,515 - RR42_RS12545 0.76 -0.8
2,697,515 - RR42_RS12545 0.76 -0.5

Or see this region's nucleotide sequence