Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12535

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS12530 and RR42_RS12535 are separated by 207 nucleotidesRR42_RS12535 and RR42_RS12540 are separated by 8 nucleotides RR42_RS12530: RR42_RS12530 - molybdenum cofactor biosynthesis protein MoaA, at 2,692,306 to 2,693,547 _RS12530 RR42_RS12535: RR42_RS12535 - threonine synthase, at 2,693,755 to 2,695,203 _RS12535 RR42_RS12540: RR42_RS12540 - homoserine dehydrogenase, at 2,695,212 to 2,696,522 _RS12540 Position (kb) 2693 2694 2695 2696Strain fitness (log2 ratio) -1 0 1at 2692.928 kb on + strand, within RR42_RS12530at 2692.928 kb on + strand, within RR42_RS12530at 2692.929 kb on - strand, within RR42_RS12530at 2693.574 kb on + strandat 2693.583 kb on + strandat 2693.583 kb on + strandat 2693.583 kb on + strandat 2693.584 kb on - strandat 2693.584 kb on - strandat 2693.584 kb on - strandat 2693.584 kb on - strandat 2693.584 kb on - strandat 2693.706 kb on + strandat 2693.706 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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2,692,928 + RR42_RS12530 0.50 +0.5
2,692,928 + RR42_RS12530 0.50 +0.0
2,692,929 - RR42_RS12530 0.50 +0.7
2,693,574 + -0.4
2,693,583 + -0.1
2,693,583 + +1.5
2,693,583 + -0.8
2,693,584 - +0.0
2,693,584 - -1.1
2,693,584 - -0.7
2,693,584 - -0.1
2,693,584 - +0.6
2,693,706 + +0.5
2,693,706 + -0.0

Or see this region's nucleotide sequence