Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07760

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07755 and RR42_RS07760 overlap by 20 nucleotidesRR42_RS07760 and RR42_RS07765 overlap by 11 nucleotidesRR42_RS07765 and RR42_RS07770 are separated by 736 nucleotides RR42_RS07755: RR42_RS07755 - NADPH flavoprotein, at 1,659,852 to 1,662,059 _RS07755 RR42_RS07760: RR42_RS07760 - thiamine biosynthesis protein ApbE, at 1,662,040 to 1,663,023 _RS07760 RR42_RS07765: RR42_RS07765 - hypothetical protein, at 1,663,013 to 1,663,219 _RS07765 RR42_RS07770: RR42_RS07770 - hypothetical protein, at 1,663,956 to 1,664,780 _RS07770 Position (kb) 1662 1663 1664Strain fitness (log2 ratio) -2 -1 0 1at 1661.139 kb on + strand, within RR42_RS07755at 1661.286 kb on + strand, within RR42_RS07755at 1661.340 kb on + strand, within RR42_RS07755at 1661.340 kb on + strand, within RR42_RS07755at 1661.340 kb on + strand, within RR42_RS07755at 1661.494 kb on - strand, within RR42_RS07755at 1661.496 kb on + strand, within RR42_RS07755at 1661.865 kb on + strandat 1661.866 kb on - strandat 1661.892 kb on - strandat 1661.987 kb on + strandat 1661.988 kb on - strandat 1661.988 kb on - strandat 1662.054 kb on + strandat 1662.054 kb on + strandat 1662.054 kb on + strandat 1662.055 kb on - strandat 1662.055 kb on - strandat 1662.138 kb on + strandat 1662.139 kb on - strand, within RR42_RS07760at 1662.538 kb on - strand, within RR42_RS07760at 1662.735 kb on + strand, within RR42_RS07760at 1662.929 kb on - strandat 1663.316 kb on + strandat 1663.412 kb on + strandat 1663.412 kb on + strandat 1663.476 kb on - strandat 1663.476 kb on - strandat 1663.606 kb on + strandat 1663.607 kb on - strandat 1663.674 kb on + strandat 1663.675 kb on - strandat 1663.724 kb on + strandat 1663.725 kb on - strandat 1663.914 kb on + strandat 1663.914 kb on + strandat 1663.927 kb on + strandat 1664.011 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,661,139 + RR42_RS07755 0.58 +0.1
1,661,286 + RR42_RS07755 0.65 +0.9
1,661,340 + RR42_RS07755 0.67 +0.6
1,661,340 + RR42_RS07755 0.67 +0.1
1,661,340 + RR42_RS07755 0.67 +0.4
1,661,494 - RR42_RS07755 0.74 -1.4
1,661,496 + RR42_RS07755 0.74 +0.0
1,661,865 + -0.1
1,661,866 - +0.6
1,661,892 - +0.1
1,661,987 + +0.1
1,661,988 - -0.3
1,661,988 - +0.8
1,662,054 + +0.8
1,662,054 + +0.1
1,662,054 + +0.1
1,662,055 - +0.2
1,662,055 - -1.5
1,662,138 + +0.1
1,662,139 - RR42_RS07760 0.10 +0.7
1,662,538 - RR42_RS07760 0.51 +0.3
1,662,735 + RR42_RS07760 0.71 +0.6
1,662,929 - +0.1
1,663,316 + +1.1
1,663,412 + +1.7
1,663,412 + +0.4
1,663,476 - -0.8
1,663,476 - +0.1
1,663,606 + -2.1
1,663,607 - -0.2
1,663,674 + -0.4
1,663,675 - +0.5
1,663,724 + -0.1
1,663,725 - -0.7
1,663,914 + -0.3
1,663,914 + +0.2
1,663,927 + +0.1
1,664,011 - -0.5

Or see this region's nucleotide sequence