Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05085

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05075 and RR42_RS05080 overlap by 4 nucleotidesRR42_RS05080 and RR42_RS05085 are separated by 57 nucleotidesRR42_RS05085 and RR42_RS05095 are separated by 850 nucleotides RR42_RS05075: RR42_RS05075 - aminocarboxymuconate-semialdehyde decarboxylase, at 1,121,834 to 1,122,847 _RS05075 RR42_RS05080: RR42_RS05080 - 3-hydroxyanthranilate 3,4-dioxygenase, at 1,122,844 to 1,123,404 _RS05080 RR42_RS05085: RR42_RS05085 - 2-aminomuconate deaminase, at 1,123,462 to 1,123,884 _RS05085 RR42_RS05095: RR42_RS05095 - 4-hyroxy-2-oxovalerate aldolase, at 1,124,735 to 1,125,739 _RS05095 Position (kb) 1123 1124Strain fitness (log2 ratio) -2 -1 0 1at 1122.688 kb on - strand, within RR42_RS05075at 1122.945 kb on - strand, within RR42_RS05080at 1122.945 kb on - strand, within RR42_RS05080at 1123.034 kb on + strand, within RR42_RS05080at 1123.227 kb on - strand, within RR42_RS05080at 1123.227 kb on - strand, within RR42_RS05080at 1123.330 kb on + strand, within RR42_RS05080at 1123.331 kb on - strand, within RR42_RS05080at 1123.395 kb on - strandat 1123.572 kb on - strand, within RR42_RS05085at 1123.581 kb on - strand, within RR42_RS05085at 1123.592 kb on + strand, within RR42_RS05085at 1123.878 kb on + strandat 1123.907 kb on + strandat 1123.907 kb on + strandat 1124.559 kb on + strandat 1124.559 kb on + strandat 1124.642 kb on - strandat 1124.883 kb on + strand, within RR42_RS05095

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,122,688 - RR42_RS05075 0.84 -0.1
1,122,945 - RR42_RS05080 0.18 -1.6
1,122,945 - RR42_RS05080 0.18 -0.5
1,123,034 + RR42_RS05080 0.34 +0.5
1,123,227 - RR42_RS05080 0.68 -0.2
1,123,227 - RR42_RS05080 0.68 -1.3
1,123,330 + RR42_RS05080 0.87 +0.7
1,123,331 - RR42_RS05080 0.87 +0.6
1,123,395 - -1.8
1,123,572 - RR42_RS05085 0.26 -0.9
1,123,581 - RR42_RS05085 0.28 -1.4
1,123,592 + RR42_RS05085 0.31 -0.5
1,123,878 + -0.3
1,123,907 + +1.2
1,123,907 + +1.0
1,124,559 + -0.6
1,124,559 + -0.0
1,124,642 - -0.9
1,124,883 + RR42_RS05095 0.15 +0.4

Or see this region's nucleotide sequence