Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS05070 and RR42_RS05075 are separated by 152 nucleotides RR42_RS05075 and RR42_RS05080 overlap by 4 nucleotides RR42_RS05080 and RR42_RS05085 are separated by 57 nucleotides
RR42_RS05070: RR42_RS05070 - amino acid permease, at 1,120,281 to 1,121,681
_RS05070
RR42_RS05075: RR42_RS05075 - aminocarboxymuconate-semialdehyde decarboxylase, at 1,121,834 to 1,122,847
_RS05075
RR42_RS05080: RR42_RS05080 - 3-hydroxyanthranilate 3,4-dioxygenase, at 1,122,844 to 1,123,404
_RS05080
RR42_RS05085: RR42_RS05085 - 2-aminomuconate deaminase, at 1,123,462 to 1,123,884
_RS05085
Position (kb) 1121
1122
1123 Strain fitness (log2 ratio) -2
-1
0
1 at 1120.930 kb on + strand, within RR42_RS05070 at 1120.931 kb on - strand, within RR42_RS05070 at 1121.111 kb on - strand, within RR42_RS05070 at 1121.174 kb on - strand, within RR42_RS05070 at 1121.174 kb on - strand, within RR42_RS05070 at 1121.230 kb on + strand, within RR42_RS05070 at 1121.253 kb on + strand, within RR42_RS05070 at 1121.341 kb on + strand, within RR42_RS05070 at 1121.341 kb on + strand, within RR42_RS05070 at 1121.342 kb on - strand, within RR42_RS05070 at 1121.395 kb on + strand, within RR42_RS05070 at 1121.434 kb on + strand, within RR42_RS05070 at 1121.434 kb on + strand, within RR42_RS05070 at 1121.434 kb on + strand, within RR42_RS05070 at 1121.435 kb on - strand, within RR42_RS05070 at 1121.537 kb on - strand, within RR42_RS05070 at 1121.999 kb on + strand, within RR42_RS05075 at 1122.067 kb on - strand, within RR42_RS05075 at 1122.067 kb on - strand, within RR42_RS05075 at 1122.688 kb on - strand, within RR42_RS05075 at 1122.945 kb on - strand, within RR42_RS05080 at 1122.945 kb on - strand, within RR42_RS05080 at 1123.034 kb on + strand, within RR42_RS05080 at 1123.227 kb on - strand, within RR42_RS05080 at 1123.227 kb on - strand, within RR42_RS05080 at 1123.330 kb on + strand, within RR42_RS05080 at 1123.331 kb on - strand, within RR42_RS05080 at 1123.395 kb on - strand at 1123.572 kb on - strand, within RR42_RS05085 at 1123.581 kb on - strand, within RR42_RS05085 at 1123.592 kb on + strand, within RR42_RS05085
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 1,120,930 + RR42_RS05070 0.46 -0.6 1,120,931 - RR42_RS05070 0.46 +0.7 1,121,111 - RR42_RS05070 0.59 -0.0 1,121,174 - RR42_RS05070 0.64 +0.1 1,121,174 - RR42_RS05070 0.64 +0.5 1,121,230 + RR42_RS05070 0.68 -0.9 1,121,253 + RR42_RS05070 0.69 +1.1 1,121,341 + RR42_RS05070 0.76 -0.3 1,121,341 + RR42_RS05070 0.76 -0.7 1,121,342 - RR42_RS05070 0.76 -0.4 1,121,395 + RR42_RS05070 0.80 -0.0 1,121,434 + RR42_RS05070 0.82 -0.4 1,121,434 + RR42_RS05070 0.82 -1.8 1,121,434 + RR42_RS05070 0.82 +0.3 1,121,435 - RR42_RS05070 0.82 +0.5 1,121,537 - RR42_RS05070 0.90 -0.3 1,121,999 + RR42_RS05075 0.16 -0.0 1,122,067 - RR42_RS05075 0.23 -2.1 1,122,067 - RR42_RS05075 0.23 -2.3 1,122,688 - RR42_RS05075 0.84 -0.1 1,122,945 - RR42_RS05080 0.18 -1.6 1,122,945 - RR42_RS05080 0.18 -0.5 1,123,034 + RR42_RS05080 0.34 +0.5 1,123,227 - RR42_RS05080 0.68 -0.2 1,123,227 - RR42_RS05080 0.68 -1.3 1,123,330 + RR42_RS05080 0.87 +0.7 1,123,331 - RR42_RS05080 0.87 +0.6 1,123,395 - -1.8 1,123,572 - RR42_RS05085 0.26 -0.9 1,123,581 - RR42_RS05085 0.28 -1.4 1,123,592 + RR42_RS05085 0.31 -0.5
Or see this region's nucleotide sequence