Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04495

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04490 and RR42_RS04495 are separated by 32 nucleotidesRR42_RS04495 and RR42_RS04500 are separated by 206 nucleotidesRR42_RS04500 and RR42_RS04505 are separated by 3 nucleotides RR42_RS04490: RR42_RS04490 - 30S ribosomal protein S1, at 1,002,995 to 1,004,689 _RS04490 RR42_RS04495: RR42_RS04495 - integration host factor subunit beta, at 1,004,722 to 1,005,219 _RS04495 RR42_RS04500: RR42_RS04500 - membrane protein, at 1,005,426 to 1,005,755 _RS04500 RR42_RS04505: RR42_RS04505 - N-acetylglucosaminyl transferase, at 1,005,759 to 1,006,997 _RS04505 Position (kb) 1004 1005 1006Strain fitness (log2 ratio) -1 0 1at 1005.021 kb on + strand, within RR42_RS04495at 1005.022 kb on - strand, within RR42_RS04495at 1005.085 kb on - strand, within RR42_RS04495at 1005.097 kb on - strand, within RR42_RS04495at 1005.114 kb on + strand, within RR42_RS04495at 1005.301 kb on + strandat 1005.301 kb on + strandat 1005.302 kb on - strandat 1005.302 kb on - strandat 1005.320 kb on + strandat 1005.729 kb on + strandat 1005.729 kb on + strandat 1005.736 kb on + strandat 1005.736 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,005,021 + RR42_RS04495 0.60 -1.6
1,005,022 - RR42_RS04495 0.60 +1.0
1,005,085 - RR42_RS04495 0.73 -1.3
1,005,097 - RR42_RS04495 0.75 -0.2
1,005,114 + RR42_RS04495 0.79 -0.6
1,005,301 + -0.3
1,005,301 + -0.1
1,005,302 - -0.1
1,005,302 - -0.7
1,005,320 + -0.2
1,005,729 + +0.8
1,005,729 + -0.0
1,005,736 + +1.7
1,005,736 + +0.2

Or see this region's nucleotide sequence