Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03345

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03335 and RR42_RS03340 are separated by 80 nucleotidesRR42_RS03340 and RR42_RS03345 are separated by 35 nucleotidesRR42_RS03345 and RR42_RS03350 are separated by 125 nucleotidesRR42_RS03350 and RR42_RS03355 are separated by 245 nucleotides RR42_RS03335: RR42_RS03335 - glycerol-3-phosphate acyltransferase, at 742,317 to 742,934 _RS03335 RR42_RS03340: RR42_RS03340 - membrane protein, at 743,015 to 743,506 _RS03340 RR42_RS03345: RR42_RS03345 - recombinase XerD, at 743,542 to 744,462 _RS03345 RR42_RS03350: RR42_RS03350 - cysteine methyltransferase, at 744,588 to 745,067 _RS03350 RR42_RS03355: RR42_RS03355 - N-acylmannosamine kinase, at 745,313 to 746,572 _RS03355 Position (kb) 743 744 745Strain fitness (log2 ratio) -3 -2 -1 0 1at 743.016 kb on + strandat 743.017 kb on - strandat 743.017 kb on - strandat 743.081 kb on - strand, within RR42_RS03340at 743.081 kb on - strand, within RR42_RS03340at 743.114 kb on - strand, within RR42_RS03340at 743.115 kb on + strand, within RR42_RS03340at 743.115 kb on + strand, within RR42_RS03340at 743.115 kb on + strand, within RR42_RS03340at 743.116 kb on - strand, within RR42_RS03340at 743.116 kb on - strand, within RR42_RS03340at 743.209 kb on + strand, within RR42_RS03340at 743.210 kb on - strand, within RR42_RS03340at 743.210 kb on - strand, within RR42_RS03340at 743.281 kb on + strand, within RR42_RS03340at 743.418 kb on + strand, within RR42_RS03340at 743.418 kb on + strand, within RR42_RS03340at 743.424 kb on + strand, within RR42_RS03340at 743.543 kb on + strandat 743.544 kb on - strandat 743.604 kb on - strandat 743.861 kb on + strand, within RR42_RS03345at 743.862 kb on - strand, within RR42_RS03345at 743.862 kb on - strand, within RR42_RS03345at 744.011 kb on + strand, within RR42_RS03345at 744.011 kb on + strand, within RR42_RS03345at 744.011 kb on + strand, within RR42_RS03345at 744.011 kb on + strand, within RR42_RS03345at 744.011 kb on + strand, within RR42_RS03345at 744.011 kb on + strand, within RR42_RS03345at 744.012 kb on - strand, within RR42_RS03345at 744.790 kb on + strand, within RR42_RS03350at 744.790 kb on + strand, within RR42_RS03350at 744.790 kb on + strand, within RR42_RS03350at 744.791 kb on - strand, within RR42_RS03350at 744.901 kb on + strand, within RR42_RS03350at 744.901 kb on + strand, within RR42_RS03350at 744.902 kb on - strand, within RR42_RS03350at 744.904 kb on + strand, within RR42_RS03350at 744.905 kb on - strand, within RR42_RS03350at 744.905 kb on - strandat 744.905 kb on - strand, within RR42_RS03350at 744.980 kb on - strand, within RR42_RS03350at 744.980 kb on - strand, within RR42_RS03350at 745.099 kb on - strandat 745.232 kb on + strandat 745.244 kb on + strandat 745.293 kb on + strandat 745.293 kb on + strandat 745.293 kb on + strandat 745.294 kb on - strandat 745.364 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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743,016 + -0.5
743,017 - -0.2
743,017 - -1.3
743,081 - RR42_RS03340 0.13 -0.2
743,081 - RR42_RS03340 0.13 -0.2
743,114 - RR42_RS03340 0.20 +0.2
743,115 + RR42_RS03340 0.20 -0.1
743,115 + RR42_RS03340 0.20 +0.2
743,115 + RR42_RS03340 0.20 -0.1
743,116 - RR42_RS03340 0.21 +0.5
743,116 - RR42_RS03340 0.21 +0.6
743,209 + RR42_RS03340 0.39 -0.6
743,210 - RR42_RS03340 0.40 -1.2
743,210 - RR42_RS03340 0.40 +0.8
743,281 + RR42_RS03340 0.54 -0.1
743,418 + RR42_RS03340 0.82 +0.2
743,418 + RR42_RS03340 0.82 +0.4
743,424 + RR42_RS03340 0.83 +0.0
743,543 + -0.1
743,544 - -1.1
743,604 - -0.1
743,861 + RR42_RS03345 0.35 -3.1
743,862 - RR42_RS03345 0.35 -2.8
743,862 - RR42_RS03345 0.35 -1.2
744,011 + RR42_RS03345 0.51 -1.5
744,011 + RR42_RS03345 0.51 -1.7
744,011 + RR42_RS03345 0.51 -1.4
744,011 + RR42_RS03345 0.51 -1.1
744,011 + RR42_RS03345 0.51 -0.3
744,011 + RR42_RS03345 0.51 +0.5
744,012 - RR42_RS03345 0.51 -0.8
744,790 + RR42_RS03350 0.42 +0.7
744,790 + RR42_RS03350 0.42 -0.8
744,790 + RR42_RS03350 0.42 +1.5
744,791 - RR42_RS03350 0.42 +0.3
744,901 + RR42_RS03350 0.65 +0.9
744,901 + RR42_RS03350 0.65 -0.9
744,902 - RR42_RS03350 0.65 +0.1
744,904 + RR42_RS03350 0.66 +0.5
744,905 - RR42_RS03350 0.66 -0.0
744,905 - -0.3
744,905 - RR42_RS03350 0.66 -1.1
744,980 - RR42_RS03350 0.82 +1.2
744,980 - RR42_RS03350 0.82 +1.0
745,099 - -0.8
745,232 + +0.1
745,244 + +0.7
745,293 + +0.6
745,293 + -0.9
745,293 + -0.3
745,294 - -0.5
745,364 + +0.7

Or see this region's nucleotide sequence