Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02500

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02495 and RR42_RS02500 are separated by 369 nucleotidesRR42_RS02500 and RR42_RS02505 are separated by 73 nucleotides RR42_RS02495: RR42_RS02495 - cardiolipin synthase; exported protein, at 559,553 to 560,872 _RS02495 RR42_RS02500: RR42_RS02500 - TetR family transcriptional regulator, at 561,242 to 561,832 _RS02500 RR42_RS02505: RR42_RS02505 - acyl-CoA dehydrogenase, at 561,906 to 563,693 _RS02505 Position (kb) 561 562Strain fitness (log2 ratio) -2 -1 0 1 2at 560.406 kb on - strand, within RR42_RS02495at 560.406 kb on - strand, within RR42_RS02495at 560.406 kb on - strand, within RR42_RS02495at 560.513 kb on + strand, within RR42_RS02495at 560.513 kb on + strand, within RR42_RS02495at 560.513 kb on + strand, within RR42_RS02495at 560.532 kb on - strand, within RR42_RS02495at 560.690 kb on + strand, within RR42_RS02495at 560.819 kb on + strandat 560.819 kb on + strandat 560.819 kb on + strandat 560.820 kb on - strandat 560.820 kb on - strandat 560.820 kb on - strandat 560.821 kb on + strandat 560.821 kb on + strandat 560.821 kb on + strandat 560.821 kb on + strandat 560.821 kb on + strandat 560.821 kb on + strandat 560.822 kb on - strandat 560.822 kb on - strandat 560.906 kb on + strandat 560.907 kb on - strandat 560.907 kb on - strandat 561.065 kb on - strandat 561.129 kb on + strandat 561.129 kb on + strandat 561.130 kb on - strandat 561.142 kb on + strandat 561.142 kb on + strandat 561.552 kb on - strand, within RR42_RS02500at 561.552 kb on - strand, within RR42_RS02500at 561.735 kb on + strand, within RR42_RS02500at 561.805 kb on + strandat 561.821 kb on + strandat 561.826 kb on + strandat 561.826 kb on + strandat 561.915 kb on + strandat 561.915 kb on + strandat 561.915 kb on + strandat 562.103 kb on + strand, within RR42_RS02505at 562.108 kb on - strand, within RR42_RS02505at 562.108 kb on - strand, within RR42_RS02505at 562.108 kb on - strand, within RR42_RS02505at 562.155 kb on + strand, within RR42_RS02505at 562.155 kb on + strand, within RR42_RS02505at 562.165 kb on - strand, within RR42_RS02505at 562.165 kb on - strand, within RR42_RS02505at 562.206 kb on + strand, within RR42_RS02505at 562.226 kb on + strand, within RR42_RS02505at 562.248 kb on + strand, within RR42_RS02505at 562.248 kb on + strand, within RR42_RS02505at 562.249 kb on - strand, within RR42_RS02505at 562.249 kb on - strand, within RR42_RS02505at 562.249 kb on - strand, within RR42_RS02505at 562.286 kb on - strand, within RR42_RS02505at 562.288 kb on - strand, within RR42_RS02505at 562.312 kb on - strand, within RR42_RS02505at 562.356 kb on + strand, within RR42_RS02505at 562.356 kb on + strand, within RR42_RS02505at 562.357 kb on - strand, within RR42_RS02505at 562.357 kb on - strand, within RR42_RS02505at 562.357 kb on - strand, within RR42_RS02505at 562.474 kb on - strand, within RR42_RS02505

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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560,406 - RR42_RS02495 0.65 -0.3
560,406 - RR42_RS02495 0.65 +0.9
560,406 - RR42_RS02495 0.65 -1.3
560,513 + RR42_RS02495 0.73 -0.5
560,513 + RR42_RS02495 0.73 +0.7
560,513 + RR42_RS02495 0.73 -0.5
560,532 - RR42_RS02495 0.74 -0.8
560,690 + RR42_RS02495 0.86 +1.3
560,819 + +0.6
560,819 + +1.1
560,819 + +0.1
560,820 - +0.3
560,820 - -0.3
560,820 - +2.5
560,821 + -0.8
560,821 + +0.8
560,821 + -1.2
560,821 + -0.5
560,821 + +0.4
560,821 + +1.4
560,822 - -0.9
560,822 - -1.1
560,906 + -0.5
560,907 - +0.8
560,907 - +1.5
561,065 - -2.1
561,129 + +0.8
561,129 + +0.1
561,130 - +0.2
561,142 + -0.2
561,142 + +0.5
561,552 - RR42_RS02500 0.52 -1.2
561,552 - RR42_RS02500 0.52 -1.5
561,735 + RR42_RS02500 0.83 -1.7
561,805 + -0.9
561,821 + -2.4
561,826 + -0.1
561,826 + +0.2
561,915 + -0.3
561,915 + -0.8
561,915 + +0.5
562,103 + RR42_RS02505 0.11 -0.0
562,108 - RR42_RS02505 0.11 -0.5
562,108 - RR42_RS02505 0.11 +1.0
562,108 - RR42_RS02505 0.11 -0.9
562,155 + RR42_RS02505 0.14 +0.7
562,155 + RR42_RS02505 0.14 -1.2
562,165 - RR42_RS02505 0.14 +2.4
562,165 - RR42_RS02505 0.14 +0.1
562,206 + RR42_RS02505 0.17 +0.3
562,226 + RR42_RS02505 0.18 +0.8
562,248 + RR42_RS02505 0.19 -0.5
562,248 + RR42_RS02505 0.19 -1.9
562,249 - RR42_RS02505 0.19 -0.3
562,249 - RR42_RS02505 0.19 -0.1
562,249 - RR42_RS02505 0.19 +0.0
562,286 - RR42_RS02505 0.21 -0.1
562,288 - RR42_RS02505 0.21 -0.9
562,312 - RR42_RS02505 0.23 +0.6
562,356 + RR42_RS02505 0.25 -0.1
562,356 + RR42_RS02505 0.25 -0.1
562,357 - RR42_RS02505 0.25 +0.2
562,357 - RR42_RS02505 0.25 +0.0
562,357 - RR42_RS02505 0.25 -0.0
562,474 - RR42_RS02505 0.32 +0.3

Or see this region's nucleotide sequence