Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02275

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02265 and RR42_RS02270 are separated by 297 nucleotidesRR42_RS02270 and RR42_RS02275 are separated by 119 nucleotidesRR42_RS02275 and RR42_RS02280 are separated by 71 nucleotides RR42_RS02265: RR42_RS02265 - excinuclease ABC subunit A, at 502,573 to 508,392 _RS02265 RR42_RS02270: RR42_RS02270 - hypothetical protein, at 508,690 to 508,974 _RS02270 RR42_RS02275: RR42_RS02275 - aspartate aminotransferase, at 509,094 to 510,287 _RS02275 RR42_RS02280: RR42_RS02280 - ABC transporter permease, at 510,359 to 511,807 _RS02280 Position (kb) 509 510 511Strain fitness (log2 ratio) -2 -1 0 1at 508.126 kb on + strandat 508.126 kb on + strandat 508.127 kb on - strandat 508.127 kb on - strandat 508.871 kb on - strand, within RR42_RS02270at 509.033 kb on + strandat 509.075 kb on + strandat 509.076 kb on - strandat 509.305 kb on - strand, within RR42_RS02275at 509.305 kb on - strand, within RR42_RS02275at 509.606 kb on + strand, within RR42_RS02275at 509.606 kb on + strand, within RR42_RS02275at 509.607 kb on - strand, within RR42_RS02275at 509.730 kb on + strand, within RR42_RS02275at 509.731 kb on - strand, within RR42_RS02275at 509.731 kb on - strand, within RR42_RS02275at 509.742 kb on + strand, within RR42_RS02275at 509.743 kb on - strand, within RR42_RS02275at 509.743 kb on - strand, within RR42_RS02275at 509.917 kb on - strand, within RR42_RS02275at 509.917 kb on - strand, within RR42_RS02275at 510.090 kb on + strand, within RR42_RS02275at 510.090 kb on + strand, within RR42_RS02275at 510.090 kb on + strand, within RR42_RS02275at 510.090 kb on + strand, within RR42_RS02275at 510.090 kb on + strand, within RR42_RS02275at 510.090 kb on + strand, within RR42_RS02275at 510.091 kb on - strand, within RR42_RS02275at 510.091 kb on - strand, within RR42_RS02275at 510.091 kb on - strand, within RR42_RS02275at 510.091 kb on - strand, within RR42_RS02275at 510.091 kb on - strand, within RR42_RS02275at 510.091 kb on - strand, within RR42_RS02275at 510.223 kb on - strandat 510.223 kb on - strandat 510.360 kb on + strandat 510.535 kb on - strand, within RR42_RS02280at 510.672 kb on + strand, within RR42_RS02280at 511.035 kb on + strand, within RR42_RS02280at 511.035 kb on + strand, within RR42_RS02280at 511.035 kb on + strand, within RR42_RS02280at 511.036 kb on - strand, within RR42_RS02280

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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508,126 + +0.8
508,126 + +0.5
508,127 - +0.1
508,127 - -0.9
508,871 - RR42_RS02270 0.64 +0.2
509,033 + +0.5
509,075 + +0.3
509,076 - -2.5
509,305 - RR42_RS02275 0.18 -0.5
509,305 - RR42_RS02275 0.18 -0.3
509,606 + RR42_RS02275 0.43 +0.7
509,606 + RR42_RS02275 0.43 +0.9
509,607 - RR42_RS02275 0.43 +0.2
509,730 + RR42_RS02275 0.53 +0.1
509,731 - RR42_RS02275 0.53 -0.0
509,731 - RR42_RS02275 0.53 +0.6
509,742 + RR42_RS02275 0.54 -0.3
509,743 - RR42_RS02275 0.54 +0.3
509,743 - RR42_RS02275 0.54 -0.7
509,917 - RR42_RS02275 0.69 +0.6
509,917 - RR42_RS02275 0.69 -0.6
510,090 + RR42_RS02275 0.83 -1.2
510,090 + RR42_RS02275 0.83 -1.6
510,090 + RR42_RS02275 0.83 +0.4
510,090 + RR42_RS02275 0.83 -0.5
510,090 + RR42_RS02275 0.83 +1.1
510,090 + RR42_RS02275 0.83 +0.5
510,091 - RR42_RS02275 0.84 +0.0
510,091 - RR42_RS02275 0.84 +0.4
510,091 - RR42_RS02275 0.84 -0.6
510,091 - RR42_RS02275 0.84 -1.6
510,091 - RR42_RS02275 0.84 +1.1
510,091 - RR42_RS02275 0.84 +0.5
510,223 - +0.0
510,223 - +0.9
510,360 + -1.5
510,535 - RR42_RS02280 0.12 -1.2
510,672 + RR42_RS02280 0.22 +0.1
511,035 + RR42_RS02280 0.47 +0.3
511,035 + RR42_RS02280 0.47 +0.7
511,035 + RR42_RS02280 0.47 -0.9
511,036 - RR42_RS02280 0.47 +1.1

Or see this region's nucleotide sequence