Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01265 and RR42_RS01270 are separated by 332 nucleotides RR42_RS01270 and RR42_RS01275 are separated by 48 nucleotides
RR42_RS01265: RR42_RS01265 - S-adenosylmethionine synthetase, at 285,827 to 286,990
_RS01265
RR42_RS01270: RR42_RS01270 - 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase, at 287,323 to 288,198
_RS01270
RR42_RS01275: RR42_RS01275 - aldehyde dehydrogenase, at 288,247 to 289,659
_RS01275
Position (kb) 287
288
289 Strain fitness (log2 ratio) -1
0
1
2 at 286.988 kb on + strand at 286.988 kb on + strand at 287.132 kb on + strand at 287.259 kb on + strand at 287.341 kb on + strand at 287.341 kb on + strand at 287.343 kb on + strand at 287.343 kb on + strand at 287.344 kb on - strand at 287.344 kb on - strand at 287.572 kb on + strand, within RR42_RS01270 at 287.572 kb on + strand, within RR42_RS01270 at 287.572 kb on + strand, within RR42_RS01270 at 287.573 kb on - strand, within RR42_RS01270 at 287.573 kb on - strand, within RR42_RS01270 at 287.573 kb on - strand, within RR42_RS01270 at 287.600 kb on - strand, within RR42_RS01270 at 287.600 kb on - strand, within RR42_RS01270 at 287.647 kb on - strand, within RR42_RS01270 at 287.647 kb on - strand, within RR42_RS01270 at 287.647 kb on - strand, within RR42_RS01270 at 287.913 kb on + strand, within RR42_RS01270 at 287.913 kb on + strand, within RR42_RS01270 at 287.913 kb on + strand, within RR42_RS01270 at 287.914 kb on - strand, within RR42_RS01270 at 287.914 kb on - strand, within RR42_RS01270 at 287.938 kb on + strand, within RR42_RS01270 at 287.938 kb on + strand, within RR42_RS01270 at 287.939 kb on - strand, within RR42_RS01270 at 287.989 kb on + strand, within RR42_RS01270 at 287.990 kb on - strand, within RR42_RS01270 at 287.990 kb on - strand, within RR42_RS01270 at 288.047 kb on + strand, within RR42_RS01270 at 288.047 kb on + strand, within RR42_RS01270 at 288.048 kb on - strand, within RR42_RS01270 at 288.048 kb on - strand, within RR42_RS01270 at 288.106 kb on + strand, within RR42_RS01270 at 288.106 kb on + strand, within RR42_RS01270 at 288.107 kb on - strand, within RR42_RS01270 at 288.107 kb on - strand, within RR42_RS01270 at 288.107 kb on - strand, within RR42_RS01270 at 288.107 kb on - strand, within RR42_RS01270 at 288.109 kb on + strand, within RR42_RS01270 at 288.109 kb on + strand, within RR42_RS01270 at 288.109 kb on + strand, within RR42_RS01270 at 288.109 kb on + strand, within RR42_RS01270 at 288.110 kb on - strand, within RR42_RS01270 at 288.110 kb on - strand, within RR42_RS01270 at 288.110 kb on - strand, within RR42_RS01270 at 288.110 kb on - strand, within RR42_RS01270 at 288.138 kb on + strand at 288.138 kb on + strand at 288.138 kb on + strand at 288.138 kb on + strand at 288.138 kb on + strand at 288.139 kb on - strand at 288.139 kb on - strand at 288.139 kb on - strand at 288.139 kb on - strand at 288.139 kb on - strand at 288.139 kb on - strand at 288.383 kb on + strand at 288.383 kb on + strand at 288.384 kb on - strand at 288.384 kb on - strand at 288.384 kb on - strand at 288.384 kb on - strand at 288.527 kb on + strand, within RR42_RS01275 at 288.528 kb on - strand, within RR42_RS01275 at 288.528 kb on - strand, within RR42_RS01275 at 288.528 kb on - strand, within RR42_RS01275 at 288.560 kb on + strand, within RR42_RS01275 at 288.560 kb on + strand, within RR42_RS01275 at 288.560 kb on + strand, within RR42_RS01275 at 288.561 kb on - strand, within RR42_RS01275 at 288.561 kb on - strand, within RR42_RS01275 at 288.587 kb on + strand, within RR42_RS01275 at 288.902 kb on + strand, within RR42_RS01275 at 288.902 kb on + strand, within RR42_RS01275 at 288.902 kb on + strand, within RR42_RS01275 at 288.903 kb on - strand, within RR42_RS01275 at 288.903 kb on - strand, within RR42_RS01275
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 286,988 + +1.1 286,988 + -1.4 287,132 + -0.8 287,259 + +1.6 287,341 + +2.4 287,341 + +0.3 287,343 + +0.3 287,343 + +0.4 287,344 - -0.2 287,344 - +0.6 287,572 + RR42_RS01270 0.28 +0.3 287,572 + RR42_RS01270 0.28 +1.4 287,572 + RR42_RS01270 0.28 -0.5 287,573 - RR42_RS01270 0.29 +0.0 287,573 - RR42_RS01270 0.29 +0.4 287,573 - RR42_RS01270 0.29 +0.9 287,600 - RR42_RS01270 0.32 +0.4 287,600 - RR42_RS01270 0.32 +0.3 287,647 - RR42_RS01270 0.37 +0.3 287,647 - RR42_RS01270 0.37 +2.1 287,647 - RR42_RS01270 0.37 +0.7 287,913 + RR42_RS01270 0.67 +2.4 287,913 + RR42_RS01270 0.67 +0.5 287,913 + RR42_RS01270 0.67 -0.1 287,914 - RR42_RS01270 0.67 -1.0 287,914 - RR42_RS01270 0.67 -0.4 287,938 + RR42_RS01270 0.70 +0.2 287,938 + RR42_RS01270 0.70 +0.8 287,939 - RR42_RS01270 0.70 +0.4 287,989 + RR42_RS01270 0.76 -0.7 287,990 - RR42_RS01270 0.76 +1.1 287,990 - RR42_RS01270 0.76 +0.4 288,047 + RR42_RS01270 0.83 -0.7 288,047 + RR42_RS01270 0.83 +0.1 288,048 - RR42_RS01270 0.83 -0.6 288,048 - RR42_RS01270 0.83 +0.5 288,106 + RR42_RS01270 0.89 +0.3 288,106 + RR42_RS01270 0.89 +0.5 288,107 - RR42_RS01270 0.89 +0.5 288,107 - RR42_RS01270 0.89 +0.5 288,107 - RR42_RS01270 0.89 +0.4 288,107 - RR42_RS01270 0.89 +1.3 288,109 + RR42_RS01270 0.90 -0.2 288,109 + RR42_RS01270 0.90 +0.5 288,109 + RR42_RS01270 0.90 -0.7 288,109 + RR42_RS01270 0.90 -0.3 288,110 - RR42_RS01270 0.90 +0.3 288,110 - RR42_RS01270 0.90 -0.7 288,110 - RR42_RS01270 0.90 -0.5 288,110 - RR42_RS01270 0.90 -0.1 288,138 + +1.1 288,138 + +0.0 288,138 + +0.7 288,138 + +0.3 288,138 + -0.8 288,139 - -0.2 288,139 - +0.6 288,139 - +0.2 288,139 - +0.4 288,139 - -0.5 288,139 - -0.1 288,383 + +0.6 288,383 + -1.3 288,384 - -0.7 288,384 - +1.6 288,384 - -0.0 288,384 - -0.3 288,527 + RR42_RS01275 0.20 -0.6 288,528 - RR42_RS01275 0.20 -0.1 288,528 - RR42_RS01275 0.20 -0.1 288,528 - RR42_RS01275 0.20 -0.2 288,560 + RR42_RS01275 0.22 +1.8 288,560 + RR42_RS01275 0.22 -0.3 288,560 + RR42_RS01275 0.22 +0.4 288,561 - RR42_RS01275 0.22 +0.8 288,561 - RR42_RS01275 0.22 -0.0 288,587 + RR42_RS01275 0.24 +0.6 288,902 + RR42_RS01275 0.46 -0.5 288,902 + RR42_RS01275 0.46 +0.2 288,902 + RR42_RS01275 0.46 -0.2 288,903 - RR42_RS01275 0.46 -0.3 288,903 - RR42_RS01275 0.46 +0.6
Or see this region's nucleotide sequence