Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4706

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4705 and Pf6N2E2_4706 are separated by 13 nucleotidesPf6N2E2_4706 and Pf6N2E2_4707 are separated by 250 nucleotides Pf6N2E2_4705 - Electron transfer flavoprotein, alpha subunit, at 5,438,089 to 5,439,309 _4705 Pf6N2E2_4706 - Electron transfer flavoprotein, beta subunit, at 5,439,323 to 5,440,093 _4706 Pf6N2E2_4707 - acetyltransferase, GNAT family, at 5,440,344 to 5,440,910 _4707 Position (kb) 5439 5440 5441Strain fitness (log2 ratio) -2 -1 0 1 2at 5438.356 kb on + strand, within Pf6N2E2_4705at 5438.356 kb on + strand, within Pf6N2E2_4705at 5438.356 kb on + strand, within Pf6N2E2_4705at 5438.357 kb on - strand, within Pf6N2E2_4705at 5438.357 kb on - strand, within Pf6N2E2_4705at 5438.357 kb on - strand, within Pf6N2E2_4705at 5438.357 kb on - strand, within Pf6N2E2_4705at 5438.442 kb on + strand, within Pf6N2E2_4705at 5438.846 kb on + strand, within Pf6N2E2_4705at 5439.103 kb on + strand, within Pf6N2E2_4705at 5439.103 kb on + strand, within Pf6N2E2_4705at 5439.277 kb on + strandat 5439.278 kb on - strandat 5439.307 kb on + strandat 5439.308 kb on - strandat 5439.308 kb on - strandat 5439.316 kb on + strandat 5439.316 kb on + strandat 5439.316 kb on + strandat 5439.316 kb on + strandat 5439.317 kb on - strandat 5439.317 kb on - strandat 5439.317 kb on - strandat 5439.328 kb on + strandat 5439.328 kb on + strandat 5439.569 kb on + strand, within Pf6N2E2_4706at 5439.831 kb on - strand, within Pf6N2E2_4706at 5440.185 kb on - strandat 5440.351 kb on + strandat 5440.351 kb on + strandat 5440.352 kb on - strandat 5440.352 kb on - strandat 5440.380 kb on - strandat 5440.431 kb on + strand, within Pf6N2E2_4707at 5440.431 kb on + strand, within Pf6N2E2_4707at 5440.431 kb on + strand, within Pf6N2E2_4707at 5440.431 kb on + strand, within Pf6N2E2_4707at 5440.491 kb on + strand, within Pf6N2E2_4707at 5440.491 kb on + strand, within Pf6N2E2_4707at 5440.492 kb on - strand, within Pf6N2E2_4707at 5440.575 kb on + strand, within Pf6N2E2_4707at 5440.575 kb on + strand, within Pf6N2E2_4707at 5440.576 kb on - strand, within Pf6N2E2_4707at 5440.576 kb on - strand, within Pf6N2E2_4707at 5440.576 kb on - strand, within Pf6N2E2_4707at 5440.576 kb on - strand, within Pf6N2E2_4707at 5440.576 kb on - strand, within Pf6N2E2_4707at 5440.576 kb on - strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.662 kb on + strand, within Pf6N2E2_4707at 5440.663 kb on - strand, within Pf6N2E2_4707at 5440.663 kb on - strand, within Pf6N2E2_4707at 5440.663 kb on - strand, within Pf6N2E2_4707at 5440.663 kb on - strand, within Pf6N2E2_4707at 5440.663 kb on - strand, within Pf6N2E2_4707at 5440.663 kb on - strand, within Pf6N2E2_4707at 5440.663 kb on - strand, within Pf6N2E2_4707at 5440.664 kb on + strand, within Pf6N2E2_4707at 5440.664 kb on + strand, within Pf6N2E2_4707at 5440.664 kb on + strand, within Pf6N2E2_4707at 5440.664 kb on + strand, within Pf6N2E2_4707at 5440.664 kb on + strand, within Pf6N2E2_4707at 5440.664 kb on + strand, within Pf6N2E2_4707at 5440.664 kb on + strand, within Pf6N2E2_4707at 5440.665 kb on - strand, within Pf6N2E2_4707at 5440.665 kb on - strand, within Pf6N2E2_4707at 5440.665 kb on - strand, within Pf6N2E2_4707at 5440.665 kb on - strand, within Pf6N2E2_4707at 5440.782 kb on + strand, within Pf6N2E2_4707at 5440.812 kb on + strand, within Pf6N2E2_4707at 5440.812 kb on + strand, within Pf6N2E2_4707at 5440.813 kb on - strand, within Pf6N2E2_4707at 5440.891 kb on - strandat 5440.891 kb on - strandat 5440.891 kb on - strandat 5440.963 kb on + strandat 5440.963 kb on + strandat 5440.963 kb on + strandat 5440.964 kb on - strandat 5440.964 kb on - strandat 5440.964 kb on - strandat 5440.964 kb on - strandat 5440.968 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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5,438,356 + Pf6N2E2_4705 0.22 -0.2
5,438,356 + Pf6N2E2_4705 0.22 +0.2
5,438,356 + Pf6N2E2_4705 0.22 +0.4
5,438,357 - Pf6N2E2_4705 0.22 +1.8
5,438,357 - Pf6N2E2_4705 0.22 -0.1
5,438,357 - Pf6N2E2_4705 0.22 -0.1
5,438,357 - Pf6N2E2_4705 0.22 -0.4
5,438,442 + Pf6N2E2_4705 0.29 -0.2
5,438,846 + Pf6N2E2_4705 0.62 -0.3
5,439,103 + Pf6N2E2_4705 0.83 -0.4
5,439,103 + Pf6N2E2_4705 0.83 +0.7
5,439,277 + -0.6
5,439,278 - -0.0
5,439,307 + -0.3
5,439,308 - +0.1
5,439,308 - +0.5
5,439,316 + +0.5
5,439,316 + +0.3
5,439,316 + +0.3
5,439,316 + -0.1
5,439,317 - +0.3
5,439,317 - -0.4
5,439,317 - -0.0
5,439,328 + +0.4
5,439,328 + -0.4
5,439,569 + Pf6N2E2_4706 0.32 -0.9
5,439,831 - Pf6N2E2_4706 0.66 -0.5
5,440,185 - +0.0
5,440,351 + -0.6
5,440,351 + -0.1
5,440,352 - +0.5
5,440,352 - -0.6
5,440,380 - +0.2
5,440,431 + Pf6N2E2_4707 0.15 -0.6
5,440,431 + Pf6N2E2_4707 0.15 +0.1
5,440,431 + Pf6N2E2_4707 0.15 +0.6
5,440,431 + Pf6N2E2_4707 0.15 +0.1
5,440,491 + Pf6N2E2_4707 0.26 +0.5
5,440,491 + Pf6N2E2_4707 0.26 +0.3
5,440,492 - Pf6N2E2_4707 0.26 -0.6
5,440,575 + Pf6N2E2_4707 0.41 +0.3
5,440,575 + Pf6N2E2_4707 0.41 -0.4
5,440,576 - Pf6N2E2_4707 0.41 +1.1
5,440,576 - Pf6N2E2_4707 0.41 +0.5
5,440,576 - Pf6N2E2_4707 0.41 +0.4
5,440,576 - Pf6N2E2_4707 0.41 +1.0
5,440,576 - Pf6N2E2_4707 0.41 +0.3
5,440,576 - Pf6N2E2_4707 0.41 +0.5
5,440,662 + Pf6N2E2_4707 0.56 +0.2
5,440,662 + Pf6N2E2_4707 0.56 -0.2
5,440,662 + Pf6N2E2_4707 0.56 -0.3
5,440,662 + Pf6N2E2_4707 0.56 +0.1
5,440,662 + Pf6N2E2_4707 0.56 +0.5
5,440,662 + Pf6N2E2_4707 0.56 +0.2
5,440,662 + Pf6N2E2_4707 0.56 +1.0
5,440,662 + Pf6N2E2_4707 0.56 +0.7
5,440,662 + Pf6N2E2_4707 0.56 -2.3
5,440,662 + Pf6N2E2_4707 0.56 +0.4
5,440,662 + Pf6N2E2_4707 0.56 +1.1
5,440,662 + Pf6N2E2_4707 0.56 -0.2
5,440,663 - Pf6N2E2_4707 0.56 +1.1
5,440,663 - Pf6N2E2_4707 0.56 -0.0
5,440,663 - Pf6N2E2_4707 0.56 +0.2
5,440,663 - Pf6N2E2_4707 0.56 +0.2
5,440,663 - Pf6N2E2_4707 0.56 +0.5
5,440,663 - Pf6N2E2_4707 0.56 -1.4
5,440,663 - Pf6N2E2_4707 0.56 +0.6
5,440,664 + Pf6N2E2_4707 0.56 +0.2
5,440,664 + Pf6N2E2_4707 0.56 -0.0
5,440,664 + Pf6N2E2_4707 0.56 +0.5
5,440,664 + Pf6N2E2_4707 0.56 +0.2
5,440,664 + Pf6N2E2_4707 0.56 +0.4
5,440,664 + Pf6N2E2_4707 0.56 -0.3
5,440,664 + Pf6N2E2_4707 0.56 +1.0
5,440,665 - Pf6N2E2_4707 0.57 -0.5
5,440,665 - Pf6N2E2_4707 0.57 +1.4
5,440,665 - Pf6N2E2_4707 0.57 -0.1
5,440,665 - Pf6N2E2_4707 0.57 -0.3
5,440,782 + Pf6N2E2_4707 0.77 -0.3
5,440,812 + Pf6N2E2_4707 0.83 -0.1
5,440,812 + Pf6N2E2_4707 0.83 -0.1
5,440,813 - Pf6N2E2_4707 0.83 -0.9
5,440,891 - -0.7
5,440,891 - +0.6
5,440,891 - +0.0
5,440,963 + +0.1
5,440,963 + +0.3
5,440,963 + +0.6
5,440,964 - -1.4
5,440,964 - +0.2
5,440,964 - -0.5
5,440,964 - -0.4
5,440,968 - -0.2

Or see this region's nucleotide sequence