Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4297 and Pf6N2E2_4298 are separated by 32 nucleotides Pf6N2E2_4298 and Pf6N2E2_4299 are separated by 25 nucleotides
Pf6N2E2_4297 - Uncharacterized protein ImpA, at 5,011,071 to 5,012,627
_4297
Pf6N2E2_4298 - Uncharacterized protein ImpB, at 5,012,660 to 5,013,163
_4298
Pf6N2E2_4299 - Uncharacterized protein ImpC, at 5,013,189 to 5,014,664
_4299
Position (kb)
5012
5013
5014 Strain fitness (log2 ratio)
-2
-1
0
1 at 5011.838 kb on + strand, within Pf6N2E2_4297 at 5011.838 kb on + strand, within Pf6N2E2_4297 at 5011.839 kb on - strand, within Pf6N2E2_4297 at 5011.839 kb on - strand, within Pf6N2E2_4297 at 5011.932 kb on + strand, within Pf6N2E2_4297 at 5011.933 kb on - strand, within Pf6N2E2_4297 at 5011.933 kb on - strand, within Pf6N2E2_4297 at 5011.960 kb on - strand, within Pf6N2E2_4297 at 5012.044 kb on + strand, within Pf6N2E2_4297 at 5012.044 kb on + strand, within Pf6N2E2_4297 at 5012.044 kb on + strand, within Pf6N2E2_4297 at 5012.044 kb on + strand, within Pf6N2E2_4297 at 5012.044 kb on + strand, within Pf6N2E2_4297 at 5012.044 kb on + strand, within Pf6N2E2_4297 at 5012.044 kb on + strand, within Pf6N2E2_4297 at 5012.044 kb on + strand, within Pf6N2E2_4297 at 5012.045 kb on - strand, within Pf6N2E2_4297 at 5012.045 kb on - strand, within Pf6N2E2_4297 at 5012.045 kb on - strand, within Pf6N2E2_4297 at 5012.045 kb on - strand, within Pf6N2E2_4297 at 5012.045 kb on - strand, within Pf6N2E2_4297 at 5012.045 kb on - strand, within Pf6N2E2_4297 at 5012.045 kb on - strand, within Pf6N2E2_4297 at 5012.045 kb on - strand, within Pf6N2E2_4297 at 5012.045 kb on - strand, within Pf6N2E2_4297 at 5012.045 kb on - strand, within Pf6N2E2_4297 at 5012.099 kb on - strand, within Pf6N2E2_4297 at 5012.099 kb on - strand, within Pf6N2E2_4297 at 5012.148 kb on - strand, within Pf6N2E2_4297 at 5012.418 kb on + strand, within Pf6N2E2_4297 at 5012.419 kb on - strand, within Pf6N2E2_4297 at 5012.419 kb on - strand, within Pf6N2E2_4297 at 5012.480 kb on + strand at 5012.480 kb on + strand at 5012.539 kb on + strand at 5012.540 kb on - strand at 5012.540 kb on - strand at 5012.540 kb on - strand at 5012.540 kb on - strand at 5012.560 kb on + strand at 5012.560 kb on + strand at 5012.583 kb on + strand at 5012.584 kb on - strand at 5012.625 kb on + strand at 5012.626 kb on - strand at 5012.777 kb on + strand, within Pf6N2E2_4298 at 5012.777 kb on + strand, within Pf6N2E2_4298 at 5012.777 kb on + strand, within Pf6N2E2_4298 at 5012.778 kb on - strand, within Pf6N2E2_4298 at 5012.935 kb on - strand, within Pf6N2E2_4298 at 5012.935 kb on - strand, within Pf6N2E2_4298 at 5013.166 kb on - strand at 5013.194 kb on + strand at 5013.194 kb on + strand at 5013.194 kb on + strand at 5013.195 kb on - strand at 5013.195 kb on - strand at 5013.195 kb on - strand at 5013.205 kb on + strand at 5013.235 kb on - strand at 5013.291 kb on + strand at 5013.526 kb on + strand, within Pf6N2E2_4299 at 5013.526 kb on + strand, within Pf6N2E2_4299 at 5013.526 kb on + strand, within Pf6N2E2_4299 at 5013.527 kb on - strand, within Pf6N2E2_4299 at 5013.527 kb on - strand, within Pf6N2E2_4299 at 5013.527 kb on - strand, within Pf6N2E2_4299 at 5013.527 kb on - strand, within Pf6N2E2_4299 at 5013.603 kb on + strand, within Pf6N2E2_4299 at 5013.603 kb on + strand, within Pf6N2E2_4299 at 5013.603 kb on + strand, within Pf6N2E2_4299 at 5013.603 kb on + strand, within Pf6N2E2_4299 at 5013.603 kb on + strand, within Pf6N2E2_4299 at 5013.604 kb on - strand, within Pf6N2E2_4299 at 5013.604 kb on - strand, within Pf6N2E2_4299 at 5013.604 kb on - strand, within Pf6N2E2_4299 at 5013.604 kb on - strand, within Pf6N2E2_4299 at 5013.604 kb on - strand, within Pf6N2E2_4299 at 5013.611 kb on + strand, within Pf6N2E2_4299 at 5013.611 kb on + strand, within Pf6N2E2_4299 at 5013.611 kb on + strand, within Pf6N2E2_4299 at 5013.611 kb on + strand, within Pf6N2E2_4299 at 5013.611 kb on + strand, within Pf6N2E2_4299 at 5013.611 kb on + strand, within Pf6N2E2_4299 at 5013.611 kb on + strand, within Pf6N2E2_4299 at 5013.611 kb on + strand, within Pf6N2E2_4299 at 5013.611 kb on + strand, within Pf6N2E2_4299 at 5013.612 kb on - strand, within Pf6N2E2_4299 at 5013.612 kb on - strand, within Pf6N2E2_4299 at 5013.615 kb on + strand, within Pf6N2E2_4299 at 5013.615 kb on + strand, within Pf6N2E2_4299 at 5013.615 kb on + strand, within Pf6N2E2_4299 at 5013.615 kb on + strand, within Pf6N2E2_4299 at 5013.615 kb on + strand, within Pf6N2E2_4299 at 5013.615 kb on + strand, within Pf6N2E2_4299 at 5013.616 kb on - strand, within Pf6N2E2_4299 at 5013.616 kb on - strand, within Pf6N2E2_4299 at 5013.616 kb on - strand, within Pf6N2E2_4299 at 5013.616 kb on - strand, within Pf6N2E2_4299 at 5013.616 kb on - strand, within Pf6N2E2_4299 at 5013.616 kb on - strand, within Pf6N2E2_4299 at 5013.616 kb on - strand, within Pf6N2E2_4299 at 5013.616 kb on - strand, within Pf6N2E2_4299 at 5013.627 kb on + strand, within Pf6N2E2_4299 at 5013.627 kb on + strand, within Pf6N2E2_4299 at 5013.628 kb on - strand, within Pf6N2E2_4299 at 5013.628 kb on - strand, within Pf6N2E2_4299 at 5013.672 kb on + strand, within Pf6N2E2_4299 at 5013.672 kb on + strand, within Pf6N2E2_4299 at 5013.673 kb on - strand, within Pf6N2E2_4299 at 5013.673 kb on - strand, within Pf6N2E2_4299 at 5013.673 kb on - strand, within Pf6N2E2_4299 at 5013.673 kb on - strand, within Pf6N2E2_4299 at 5013.673 kb on - strand, within Pf6N2E2_4299 at 5013.673 kb on - strand, within Pf6N2E2_4299 at 5013.673 kb on - strand, within Pf6N2E2_4299 at 5013.673 kb on - strand, within Pf6N2E2_4299 at 5013.714 kb on + strand, within Pf6N2E2_4299 at 5013.715 kb on - strand, within Pf6N2E2_4299 at 5013.715 kb on - strand, within Pf6N2E2_4299 at 5013.715 kb on - strand, within Pf6N2E2_4299 at 5013.715 kb on - strand, within Pf6N2E2_4299 at 5013.715 kb on - strand, within Pf6N2E2_4299 at 5013.795 kb on - strand, within Pf6N2E2_4299 at 5013.888 kb on + strand, within Pf6N2E2_4299 at 5013.888 kb on + strand, within Pf6N2E2_4299 at 5013.966 kb on + strand, within Pf6N2E2_4299 at 5013.986 kb on + strand, within Pf6N2E2_4299 at 5013.999 kb on + strand, within Pf6N2E2_4299 at 5014.000 kb on - strand, within Pf6N2E2_4299 at 5014.000 kb on - strand, within Pf6N2E2_4299 at 5014.000 kb on - strand, within Pf6N2E2_4299 at 5014.020 kb on + strand, within Pf6N2E2_4299 at 5014.020 kb on + strand, within Pf6N2E2_4299 at 5014.020 kb on + strand, within Pf6N2E2_4299 at 5014.021 kb on - strand, within Pf6N2E2_4299
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 5,011,838 + Pf6N2E2_4297 0.49 -0.2 5,011,838 + Pf6N2E2_4297 0.49 +0.1 5,011,839 - Pf6N2E2_4297 0.49 +0.3 5,011,839 - Pf6N2E2_4297 0.49 +0.6 5,011,932 + Pf6N2E2_4297 0.55 -0.9 5,011,933 - Pf6N2E2_4297 0.55 -0.6 5,011,933 - Pf6N2E2_4297 0.55 -0.5 5,011,960 - Pf6N2E2_4297 0.57 +0.8 5,012,044 + Pf6N2E2_4297 0.62 -0.4 5,012,044 + Pf6N2E2_4297 0.62 -0.8 5,012,044 + Pf6N2E2_4297 0.62 -0.8 5,012,044 + Pf6N2E2_4297 0.62 -0.5 5,012,044 + Pf6N2E2_4297 0.62 -0.7 5,012,044 + Pf6N2E2_4297 0.62 -2.6 5,012,044 + Pf6N2E2_4297 0.62 -1.2 5,012,044 + Pf6N2E2_4297 0.62 +0.2 5,012,045 - Pf6N2E2_4297 0.63 -0.2 5,012,045 - Pf6N2E2_4297 0.63 +0.2 5,012,045 - Pf6N2E2_4297 0.63 -1.4 5,012,045 - Pf6N2E2_4297 0.63 -1.0 5,012,045 - Pf6N2E2_4297 0.63 +0.7 5,012,045 - Pf6N2E2_4297 0.63 +0.3 5,012,045 - Pf6N2E2_4297 0.63 -0.9 5,012,045 - Pf6N2E2_4297 0.63 +0.4 5,012,045 - Pf6N2E2_4297 0.63 +0.6 5,012,045 - Pf6N2E2_4297 0.63 -0.3 5,012,099 - Pf6N2E2_4297 0.66 -0.1 5,012,099 - Pf6N2E2_4297 0.66 +0.7 5,012,148 - Pf6N2E2_4297 0.69 +0.7 5,012,418 + Pf6N2E2_4297 0.87 -0.6 5,012,419 - Pf6N2E2_4297 0.87 -0.5 5,012,419 - Pf6N2E2_4297 0.87 +0.9 5,012,480 + -1.2 5,012,480 + -1.8 5,012,539 + -1.2 5,012,540 - +1.1 5,012,540 - -0.8 5,012,540 - +1.0 5,012,540 - +1.1 5,012,560 + -2.4 5,012,560 + -1.3 5,012,583 + -1.5 5,012,584 - -0.1 5,012,625 + -1.5 5,012,626 - -0.2 5,012,777 + Pf6N2E2_4298 0.23 -1.1 5,012,777 + Pf6N2E2_4298 0.23 -1.4 5,012,777 + Pf6N2E2_4298 0.23 -1.6 5,012,778 - Pf6N2E2_4298 0.23 +1.3 5,012,935 - Pf6N2E2_4298 0.55 +0.6 5,012,935 - Pf6N2E2_4298 0.55 -0.6 5,013,166 - -0.3 5,013,194 + -0.6 5,013,194 + +1.1 5,013,194 + -0.1 5,013,195 - +0.2 5,013,195 - +0.5 5,013,195 - +1.0 5,013,205 + +0.4 5,013,235 - -1.0 5,013,291 + -0.4 5,013,526 + Pf6N2E2_4299 0.23 -0.7 5,013,526 + Pf6N2E2_4299 0.23 +0.1 5,013,526 + Pf6N2E2_4299 0.23 -0.1 5,013,527 - Pf6N2E2_4299 0.23 -0.4 5,013,527 - Pf6N2E2_4299 0.23 -0.2 5,013,527 - Pf6N2E2_4299 0.23 +1.2 5,013,527 - Pf6N2E2_4299 0.23 -0.3 5,013,603 + Pf6N2E2_4299 0.28 -0.2 5,013,603 + Pf6N2E2_4299 0.28 +0.6 5,013,603 + Pf6N2E2_4299 0.28 +0.7 5,013,603 + Pf6N2E2_4299 0.28 -0.6 5,013,603 + Pf6N2E2_4299 0.28 -0.5 5,013,604 - Pf6N2E2_4299 0.28 -0.6 5,013,604 - Pf6N2E2_4299 0.28 +0.5 5,013,604 - Pf6N2E2_4299 0.28 +0.4 5,013,604 - Pf6N2E2_4299 0.28 +0.8 5,013,604 - Pf6N2E2_4299 0.28 +0.8 5,013,611 + Pf6N2E2_4299 0.29 -0.6 5,013,611 + Pf6N2E2_4299 0.29 -0.2 5,013,611 + Pf6N2E2_4299 0.29 +0.4 5,013,611 + Pf6N2E2_4299 0.29 +0.2 5,013,611 + Pf6N2E2_4299 0.29 +1.0 5,013,611 + Pf6N2E2_4299 0.29 -0.2 5,013,611 + Pf6N2E2_4299 0.29 -0.2 5,013,611 + Pf6N2E2_4299 0.29 -0.3 5,013,611 + Pf6N2E2_4299 0.29 -0.7 5,013,612 - Pf6N2E2_4299 0.29 +0.2 5,013,612 - Pf6N2E2_4299 0.29 +1.3 5,013,615 + Pf6N2E2_4299 0.29 -0.3 5,013,615 + Pf6N2E2_4299 0.29 +0.3 5,013,615 + Pf6N2E2_4299 0.29 +0.8 5,013,615 + Pf6N2E2_4299 0.29 -0.5 5,013,615 + Pf6N2E2_4299 0.29 +0.1 5,013,615 + Pf6N2E2_4299 0.29 -0.2 5,013,616 - Pf6N2E2_4299 0.29 +0.1 5,013,616 - Pf6N2E2_4299 0.29 -0.1 5,013,616 - Pf6N2E2_4299 0.29 +0.1 5,013,616 - Pf6N2E2_4299 0.29 -0.1 5,013,616 - Pf6N2E2_4299 0.29 +0.5 5,013,616 - Pf6N2E2_4299 0.29 -1.0 5,013,616 - Pf6N2E2_4299 0.29 +1.0 5,013,616 - Pf6N2E2_4299 0.29 +0.5 5,013,627 + Pf6N2E2_4299 0.30 +0.3 5,013,627 + Pf6N2E2_4299 0.30 -0.3 5,013,628 - Pf6N2E2_4299 0.30 +0.2 5,013,628 - Pf6N2E2_4299 0.30 -1.0 5,013,672 + Pf6N2E2_4299 0.33 -0.3 5,013,672 + Pf6N2E2_4299 0.33 -0.5 5,013,673 - Pf6N2E2_4299 0.33 -0.2 5,013,673 - Pf6N2E2_4299 0.33 -0.3 5,013,673 - Pf6N2E2_4299 0.33 +0.7 5,013,673 - Pf6N2E2_4299 0.33 +1.3 5,013,673 - Pf6N2E2_4299 0.33 +0.1 5,013,673 - Pf6N2E2_4299 0.33 +0.4 5,013,673 - Pf6N2E2_4299 0.33 -0.8 5,013,673 - Pf6N2E2_4299 0.33 +0.3 5,013,714 + Pf6N2E2_4299 0.36 -0.3 5,013,715 - Pf6N2E2_4299 0.36 +0.0 5,013,715 - Pf6N2E2_4299 0.36 +0.7 5,013,715 - Pf6N2E2_4299 0.36 +0.4 5,013,715 - Pf6N2E2_4299 0.36 -0.5 5,013,715 - Pf6N2E2_4299 0.36 -1.1 5,013,795 - Pf6N2E2_4299 0.41 +0.1 5,013,888 + Pf6N2E2_4299 0.47 -0.2 5,013,888 + Pf6N2E2_4299 0.47 -1.1 5,013,966 + Pf6N2E2_4299 0.53 -1.0 5,013,986 + Pf6N2E2_4299 0.54 -0.6 5,013,999 + Pf6N2E2_4299 0.55 -0.5 5,014,000 - Pf6N2E2_4299 0.55 +0.4 5,014,000 - Pf6N2E2_4299 0.55 +0.1 5,014,000 - Pf6N2E2_4299 0.55 +0.8 5,014,020 + Pf6N2E2_4299 0.56 -0.6 5,014,020 + Pf6N2E2_4299 0.56 +0.5 5,014,020 + Pf6N2E2_4299 0.56 +0.5 5,014,021 - Pf6N2E2_4299 0.56 -0.2
Or see this region's nucleotide sequence