Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4298

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4297 and Pf6N2E2_4298 are separated by 32 nucleotidesPf6N2E2_4298 and Pf6N2E2_4299 are separated by 25 nucleotides Pf6N2E2_4297 - Uncharacterized protein ImpA, at 5,011,071 to 5,012,627 _4297 Pf6N2E2_4298 - Uncharacterized protein ImpB, at 5,012,660 to 5,013,163 _4298 Pf6N2E2_4299 - Uncharacterized protein ImpC, at 5,013,189 to 5,014,664 _4299 Position (kb) 5012 5013 5014Strain fitness (log2 ratio) -2 -1 0 1at 5011.838 kb on + strand, within Pf6N2E2_4297at 5011.838 kb on + strand, within Pf6N2E2_4297at 5011.839 kb on - strand, within Pf6N2E2_4297at 5011.839 kb on - strand, within Pf6N2E2_4297at 5011.932 kb on + strand, within Pf6N2E2_4297at 5011.933 kb on - strand, within Pf6N2E2_4297at 5011.933 kb on - strand, within Pf6N2E2_4297at 5011.960 kb on - strand, within Pf6N2E2_4297at 5012.044 kb on + strand, within Pf6N2E2_4297at 5012.044 kb on + strand, within Pf6N2E2_4297at 5012.044 kb on + strand, within Pf6N2E2_4297at 5012.044 kb on + strand, within Pf6N2E2_4297at 5012.044 kb on + strand, within Pf6N2E2_4297at 5012.044 kb on + strand, within Pf6N2E2_4297at 5012.044 kb on + strand, within Pf6N2E2_4297at 5012.044 kb on + strand, within Pf6N2E2_4297at 5012.045 kb on - strand, within Pf6N2E2_4297at 5012.045 kb on - strand, within Pf6N2E2_4297at 5012.045 kb on - strand, within Pf6N2E2_4297at 5012.045 kb on - strand, within Pf6N2E2_4297at 5012.045 kb on - strand, within Pf6N2E2_4297at 5012.045 kb on - strand, within Pf6N2E2_4297at 5012.045 kb on - strand, within Pf6N2E2_4297at 5012.045 kb on - strand, within Pf6N2E2_4297at 5012.045 kb on - strand, within Pf6N2E2_4297at 5012.045 kb on - strand, within Pf6N2E2_4297at 5012.099 kb on - strand, within Pf6N2E2_4297at 5012.099 kb on - strand, within Pf6N2E2_4297at 5012.148 kb on - strand, within Pf6N2E2_4297at 5012.418 kb on + strand, within Pf6N2E2_4297at 5012.419 kb on - strand, within Pf6N2E2_4297at 5012.419 kb on - strand, within Pf6N2E2_4297at 5012.480 kb on + strandat 5012.480 kb on + strandat 5012.539 kb on + strandat 5012.540 kb on - strandat 5012.540 kb on - strandat 5012.540 kb on - strandat 5012.540 kb on - strandat 5012.560 kb on + strandat 5012.560 kb on + strandat 5012.583 kb on + strandat 5012.584 kb on - strandat 5012.625 kb on + strandat 5012.626 kb on - strandat 5012.777 kb on + strand, within Pf6N2E2_4298at 5012.777 kb on + strand, within Pf6N2E2_4298at 5012.777 kb on + strand, within Pf6N2E2_4298at 5012.778 kb on - strand, within Pf6N2E2_4298at 5012.935 kb on - strand, within Pf6N2E2_4298at 5012.935 kb on - strand, within Pf6N2E2_4298at 5013.166 kb on - strandat 5013.194 kb on + strandat 5013.194 kb on + strandat 5013.194 kb on + strandat 5013.195 kb on - strandat 5013.195 kb on - strandat 5013.195 kb on - strandat 5013.205 kb on + strandat 5013.235 kb on - strandat 5013.291 kb on + strandat 5013.526 kb on + strand, within Pf6N2E2_4299at 5013.526 kb on + strand, within Pf6N2E2_4299at 5013.526 kb on + strand, within Pf6N2E2_4299at 5013.527 kb on - strand, within Pf6N2E2_4299at 5013.527 kb on - strand, within Pf6N2E2_4299at 5013.527 kb on - strand, within Pf6N2E2_4299at 5013.527 kb on - strand, within Pf6N2E2_4299at 5013.603 kb on + strand, within Pf6N2E2_4299at 5013.603 kb on + strand, within Pf6N2E2_4299at 5013.603 kb on + strand, within Pf6N2E2_4299at 5013.603 kb on + strand, within Pf6N2E2_4299at 5013.603 kb on + strand, within Pf6N2E2_4299at 5013.604 kb on - strand, within Pf6N2E2_4299at 5013.604 kb on - strand, within Pf6N2E2_4299at 5013.604 kb on - strand, within Pf6N2E2_4299at 5013.604 kb on - strand, within Pf6N2E2_4299at 5013.604 kb on - strand, within Pf6N2E2_4299at 5013.611 kb on + strand, within Pf6N2E2_4299at 5013.611 kb on + strand, within Pf6N2E2_4299at 5013.611 kb on + strand, within Pf6N2E2_4299at 5013.611 kb on + strand, within Pf6N2E2_4299at 5013.611 kb on + strand, within Pf6N2E2_4299at 5013.611 kb on + strand, within Pf6N2E2_4299at 5013.611 kb on + strand, within Pf6N2E2_4299at 5013.611 kb on + strand, within Pf6N2E2_4299at 5013.611 kb on + strand, within Pf6N2E2_4299at 5013.612 kb on - strand, within Pf6N2E2_4299at 5013.612 kb on - strand, within Pf6N2E2_4299at 5013.615 kb on + strand, within Pf6N2E2_4299at 5013.615 kb on + strand, within Pf6N2E2_4299at 5013.615 kb on + strand, within Pf6N2E2_4299at 5013.615 kb on + strand, within Pf6N2E2_4299at 5013.615 kb on + strand, within Pf6N2E2_4299at 5013.615 kb on + strand, within Pf6N2E2_4299at 5013.616 kb on - strand, within Pf6N2E2_4299at 5013.616 kb on - strand, within Pf6N2E2_4299at 5013.616 kb on - strand, within Pf6N2E2_4299at 5013.616 kb on - strand, within Pf6N2E2_4299at 5013.616 kb on - strand, within Pf6N2E2_4299at 5013.616 kb on - strand, within Pf6N2E2_4299at 5013.616 kb on - strand, within Pf6N2E2_4299at 5013.616 kb on - strand, within Pf6N2E2_4299at 5013.627 kb on + strand, within Pf6N2E2_4299at 5013.627 kb on + strand, within Pf6N2E2_4299at 5013.628 kb on - strand, within Pf6N2E2_4299at 5013.628 kb on - strand, within Pf6N2E2_4299at 5013.672 kb on + strand, within Pf6N2E2_4299at 5013.672 kb on + strand, within Pf6N2E2_4299at 5013.673 kb on - strand, within Pf6N2E2_4299at 5013.673 kb on - strand, within Pf6N2E2_4299at 5013.673 kb on - strand, within Pf6N2E2_4299at 5013.673 kb on - strand, within Pf6N2E2_4299at 5013.673 kb on - strand, within Pf6N2E2_4299at 5013.673 kb on - strand, within Pf6N2E2_4299at 5013.673 kb on - strand, within Pf6N2E2_4299at 5013.673 kb on - strand, within Pf6N2E2_4299at 5013.714 kb on + strand, within Pf6N2E2_4299at 5013.715 kb on - strand, within Pf6N2E2_4299at 5013.715 kb on - strand, within Pf6N2E2_4299at 5013.715 kb on - strand, within Pf6N2E2_4299at 5013.715 kb on - strand, within Pf6N2E2_4299at 5013.715 kb on - strand, within Pf6N2E2_4299at 5013.795 kb on - strand, within Pf6N2E2_4299at 5013.888 kb on + strand, within Pf6N2E2_4299at 5013.888 kb on + strand, within Pf6N2E2_4299at 5013.966 kb on + strand, within Pf6N2E2_4299at 5013.986 kb on + strand, within Pf6N2E2_4299at 5013.999 kb on + strand, within Pf6N2E2_4299at 5014.000 kb on - strand, within Pf6N2E2_4299at 5014.000 kb on - strand, within Pf6N2E2_4299at 5014.000 kb on - strand, within Pf6N2E2_4299at 5014.020 kb on + strand, within Pf6N2E2_4299at 5014.020 kb on + strand, within Pf6N2E2_4299at 5014.020 kb on + strand, within Pf6N2E2_4299at 5014.021 kb on - strand, within Pf6N2E2_4299

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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5,011,838 + Pf6N2E2_4297 0.49 -0.2
5,011,838 + Pf6N2E2_4297 0.49 +0.1
5,011,839 - Pf6N2E2_4297 0.49 +0.3
5,011,839 - Pf6N2E2_4297 0.49 +0.6
5,011,932 + Pf6N2E2_4297 0.55 -0.9
5,011,933 - Pf6N2E2_4297 0.55 -0.6
5,011,933 - Pf6N2E2_4297 0.55 -0.5
5,011,960 - Pf6N2E2_4297 0.57 +0.8
5,012,044 + Pf6N2E2_4297 0.62 -0.4
5,012,044 + Pf6N2E2_4297 0.62 -0.8
5,012,044 + Pf6N2E2_4297 0.62 -0.8
5,012,044 + Pf6N2E2_4297 0.62 -0.5
5,012,044 + Pf6N2E2_4297 0.62 -0.7
5,012,044 + Pf6N2E2_4297 0.62 -2.6
5,012,044 + Pf6N2E2_4297 0.62 -1.2
5,012,044 + Pf6N2E2_4297 0.62 +0.2
5,012,045 - Pf6N2E2_4297 0.63 -0.2
5,012,045 - Pf6N2E2_4297 0.63 +0.2
5,012,045 - Pf6N2E2_4297 0.63 -1.4
5,012,045 - Pf6N2E2_4297 0.63 -1.0
5,012,045 - Pf6N2E2_4297 0.63 +0.7
5,012,045 - Pf6N2E2_4297 0.63 +0.3
5,012,045 - Pf6N2E2_4297 0.63 -0.9
5,012,045 - Pf6N2E2_4297 0.63 +0.4
5,012,045 - Pf6N2E2_4297 0.63 +0.6
5,012,045 - Pf6N2E2_4297 0.63 -0.3
5,012,099 - Pf6N2E2_4297 0.66 -0.1
5,012,099 - Pf6N2E2_4297 0.66 +0.7
5,012,148 - Pf6N2E2_4297 0.69 +0.7
5,012,418 + Pf6N2E2_4297 0.87 -0.6
5,012,419 - Pf6N2E2_4297 0.87 -0.5
5,012,419 - Pf6N2E2_4297 0.87 +0.9
5,012,480 + -1.2
5,012,480 + -1.8
5,012,539 + -1.2
5,012,540 - +1.1
5,012,540 - -0.8
5,012,540 - +1.0
5,012,540 - +1.1
5,012,560 + -2.4
5,012,560 + -1.3
5,012,583 + -1.5
5,012,584 - -0.1
5,012,625 + -1.5
5,012,626 - -0.2
5,012,777 + Pf6N2E2_4298 0.23 -1.1
5,012,777 + Pf6N2E2_4298 0.23 -1.4
5,012,777 + Pf6N2E2_4298 0.23 -1.6
5,012,778 - Pf6N2E2_4298 0.23 +1.3
5,012,935 - Pf6N2E2_4298 0.55 +0.6
5,012,935 - Pf6N2E2_4298 0.55 -0.6
5,013,166 - -0.3
5,013,194 + -0.6
5,013,194 + +1.1
5,013,194 + -0.1
5,013,195 - +0.2
5,013,195 - +0.5
5,013,195 - +1.0
5,013,205 + +0.4
5,013,235 - -1.0
5,013,291 + -0.4
5,013,526 + Pf6N2E2_4299 0.23 -0.7
5,013,526 + Pf6N2E2_4299 0.23 +0.1
5,013,526 + Pf6N2E2_4299 0.23 -0.1
5,013,527 - Pf6N2E2_4299 0.23 -0.4
5,013,527 - Pf6N2E2_4299 0.23 -0.2
5,013,527 - Pf6N2E2_4299 0.23 +1.2
5,013,527 - Pf6N2E2_4299 0.23 -0.3
5,013,603 + Pf6N2E2_4299 0.28 -0.2
5,013,603 + Pf6N2E2_4299 0.28 +0.6
5,013,603 + Pf6N2E2_4299 0.28 +0.7
5,013,603 + Pf6N2E2_4299 0.28 -0.6
5,013,603 + Pf6N2E2_4299 0.28 -0.5
5,013,604 - Pf6N2E2_4299 0.28 -0.6
5,013,604 - Pf6N2E2_4299 0.28 +0.5
5,013,604 - Pf6N2E2_4299 0.28 +0.4
5,013,604 - Pf6N2E2_4299 0.28 +0.8
5,013,604 - Pf6N2E2_4299 0.28 +0.8
5,013,611 + Pf6N2E2_4299 0.29 -0.6
5,013,611 + Pf6N2E2_4299 0.29 -0.2
5,013,611 + Pf6N2E2_4299 0.29 +0.4
5,013,611 + Pf6N2E2_4299 0.29 +0.2
5,013,611 + Pf6N2E2_4299 0.29 +1.0
5,013,611 + Pf6N2E2_4299 0.29 -0.2
5,013,611 + Pf6N2E2_4299 0.29 -0.2
5,013,611 + Pf6N2E2_4299 0.29 -0.3
5,013,611 + Pf6N2E2_4299 0.29 -0.7
5,013,612 - Pf6N2E2_4299 0.29 +0.2
5,013,612 - Pf6N2E2_4299 0.29 +1.3
5,013,615 + Pf6N2E2_4299 0.29 -0.3
5,013,615 + Pf6N2E2_4299 0.29 +0.3
5,013,615 + Pf6N2E2_4299 0.29 +0.8
5,013,615 + Pf6N2E2_4299 0.29 -0.5
5,013,615 + Pf6N2E2_4299 0.29 +0.1
5,013,615 + Pf6N2E2_4299 0.29 -0.2
5,013,616 - Pf6N2E2_4299 0.29 +0.1
5,013,616 - Pf6N2E2_4299 0.29 -0.1
5,013,616 - Pf6N2E2_4299 0.29 +0.1
5,013,616 - Pf6N2E2_4299 0.29 -0.1
5,013,616 - Pf6N2E2_4299 0.29 +0.5
5,013,616 - Pf6N2E2_4299 0.29 -1.0
5,013,616 - Pf6N2E2_4299 0.29 +1.0
5,013,616 - Pf6N2E2_4299 0.29 +0.5
5,013,627 + Pf6N2E2_4299 0.30 +0.3
5,013,627 + Pf6N2E2_4299 0.30 -0.3
5,013,628 - Pf6N2E2_4299 0.30 +0.2
5,013,628 - Pf6N2E2_4299 0.30 -1.0
5,013,672 + Pf6N2E2_4299 0.33 -0.3
5,013,672 + Pf6N2E2_4299 0.33 -0.5
5,013,673 - Pf6N2E2_4299 0.33 -0.2
5,013,673 - Pf6N2E2_4299 0.33 -0.3
5,013,673 - Pf6N2E2_4299 0.33 +0.7
5,013,673 - Pf6N2E2_4299 0.33 +1.3
5,013,673 - Pf6N2E2_4299 0.33 +0.1
5,013,673 - Pf6N2E2_4299 0.33 +0.4
5,013,673 - Pf6N2E2_4299 0.33 -0.8
5,013,673 - Pf6N2E2_4299 0.33 +0.3
5,013,714 + Pf6N2E2_4299 0.36 -0.3
5,013,715 - Pf6N2E2_4299 0.36 +0.0
5,013,715 - Pf6N2E2_4299 0.36 +0.7
5,013,715 - Pf6N2E2_4299 0.36 +0.4
5,013,715 - Pf6N2E2_4299 0.36 -0.5
5,013,715 - Pf6N2E2_4299 0.36 -1.1
5,013,795 - Pf6N2E2_4299 0.41 +0.1
5,013,888 + Pf6N2E2_4299 0.47 -0.2
5,013,888 + Pf6N2E2_4299 0.47 -1.1
5,013,966 + Pf6N2E2_4299 0.53 -1.0
5,013,986 + Pf6N2E2_4299 0.54 -0.6
5,013,999 + Pf6N2E2_4299 0.55 -0.5
5,014,000 - Pf6N2E2_4299 0.55 +0.4
5,014,000 - Pf6N2E2_4299 0.55 +0.1
5,014,000 - Pf6N2E2_4299 0.55 +0.8
5,014,020 + Pf6N2E2_4299 0.56 -0.6
5,014,020 + Pf6N2E2_4299 0.56 +0.5
5,014,020 + Pf6N2E2_4299 0.56 +0.5
5,014,021 - Pf6N2E2_4299 0.56 -0.2

Or see this region's nucleotide sequence