Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3601 and Pf6N2E2_3602 are separated by 117 nucleotides Pf6N2E2_3602 and Pf6N2E2_3603 are separated by 18 nucleotides Pf6N2E2_3603 and Pf6N2E2_3604 are separated by 36 nucleotides Pf6N2E2_3604 and Pf6N2E2_3605 are separated by 28 nucleotides
Pf6N2E2_3601 - Replicative DNA helicase (EC 3.6.1.-), at 4,192,567 to 4,193,964
_3601
Pf6N2E2_3602 - LSU ribosomal protein L9p, at 4,194,082 to 4,194,528
_3602
Pf6N2E2_3603 - FIG003573: hypothetical protein, at 4,194,547 to 4,195,437
_3603
Pf6N2E2_3604 - SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent, at 4,195,474 to 4,195,704
_3604
Pf6N2E2_3605 - SSU ribosomal protein S6p, at 4,195,733 to 4,196,161
_3605
Position (kb)
4194
4195
4196 Strain fitness (log2 ratio)
-2
-1
0
1 at 4194.083 kb on + strand at 4194.158 kb on - strand, within Pf6N2E2_3602 at 4194.444 kb on - strand, within Pf6N2E2_3602 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.680 kb on - strand, within Pf6N2E2_3603 at 4194.897 kb on - strand, within Pf6N2E2_3603 at 4194.897 kb on - strand, within Pf6N2E2_3603 at 4194.897 kb on - strand, within Pf6N2E2_3603 at 4195.106 kb on - strand, within Pf6N2E2_3603 at 4196.251 kb on - strand at 4196.251 kb on - strand at 4196.323 kb on - strand at 4196.418 kb on + strand at 4196.418 kb on + strand at 4196.419 kb on - strand at 4196.419 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 4,194,083 + -0.8 4,194,158 - Pf6N2E2_3602 0.17 -0.7 4,194,444 - Pf6N2E2_3602 0.81 -1.7 4,194,678 - Pf6N2E2_3603 0.15 +0.7 4,194,678 - Pf6N2E2_3603 0.15 -0.7 4,194,678 - Pf6N2E2_3603 0.15 +0.3 4,194,678 - Pf6N2E2_3603 0.15 +0.6 4,194,678 - Pf6N2E2_3603 0.15 -0.8 4,194,678 - Pf6N2E2_3603 0.15 -1.6 4,194,678 - Pf6N2E2_3603 0.15 +0.2 4,194,678 - Pf6N2E2_3603 0.15 +0.1 4,194,678 - Pf6N2E2_3603 0.15 -1.8 4,194,678 - Pf6N2E2_3603 0.15 +0.5 4,194,678 - Pf6N2E2_3603 0.15 +0.1 4,194,678 - Pf6N2E2_3603 0.15 -1.3 4,194,678 - Pf6N2E2_3603 0.15 -1.3 4,194,678 - Pf6N2E2_3603 0.15 -0.1 4,194,680 - Pf6N2E2_3603 0.15 -1.0 4,194,897 - Pf6N2E2_3603 0.39 -0.9 4,194,897 - Pf6N2E2_3603 0.39 -0.6 4,194,897 - Pf6N2E2_3603 0.39 +0.2 4,195,106 - Pf6N2E2_3603 0.63 -1.1 4,196,251 - +0.3 4,196,251 - +0.0 4,196,323 - +0.9 4,196,418 + -0.6 4,196,418 + -0.0 4,196,419 - +0.1 4,196,419 - -0.2
Or see this region's nucleotide sequence