Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1606

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1605 and Pf6N2E2_1606 are separated by 16 nucleotidesPf6N2E2_1606 and Pf6N2E2_1607 are separated by 254 nucleotides Pf6N2E2_1605 - Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-), at 1,877,340 to 1,878,593 _1605 Pf6N2E2_1606 - Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-), at 1,878,610 to 1,879,707 _1606 Pf6N2E2_1607 - Exopolyphosphatase (EC 3.6.1.11), at 1,879,962 to 1,880,897 _1607 Position (kb) 1878 1879 1880Strain fitness (log2 ratio) -3 -2 -1 0 1at 1877.791 kb on + strand, within Pf6N2E2_1605at 1877.792 kb on - strand, within Pf6N2E2_1605at 1877.792 kb on - strand, within Pf6N2E2_1605at 1877.792 kb on - strand, within Pf6N2E2_1605at 1877.878 kb on + strand, within Pf6N2E2_1605at 1877.879 kb on - strand, within Pf6N2E2_1605at 1878.196 kb on + strand, within Pf6N2E2_1605at 1878.196 kb on + strand, within Pf6N2E2_1605at 1878.196 kb on + strand, within Pf6N2E2_1605at 1878.201 kb on - strand, within Pf6N2E2_1605at 1878.262 kb on + strand, within Pf6N2E2_1605at 1878.262 kb on + strand, within Pf6N2E2_1605at 1878.262 kb on + strand, within Pf6N2E2_1605at 1878.571 kb on - strandat 1878.630 kb on - strandat 1878.797 kb on + strand, within Pf6N2E2_1606at 1878.845 kb on + strand, within Pf6N2E2_1606at 1878.845 kb on + strand, within Pf6N2E2_1606at 1878.846 kb on - strand, within Pf6N2E2_1606at 1878.956 kb on + strand, within Pf6N2E2_1606at 1878.957 kb on - strand, within Pf6N2E2_1606at 1879.242 kb on + strand, within Pf6N2E2_1606at 1879.242 kb on + strand, within Pf6N2E2_1606at 1879.242 kb on + strand, within Pf6N2E2_1606at 1879.242 kb on + strand, within Pf6N2E2_1606at 1879.243 kb on - strand, within Pf6N2E2_1606at 1879.479 kb on - strand, within Pf6N2E2_1606at 1879.526 kb on + strand, within Pf6N2E2_1606at 1879.556 kb on + strand, within Pf6N2E2_1606at 1879.556 kb on + strand, within Pf6N2E2_1606at 1879.641 kb on - strandat 1879.688 kb on + strandat 1879.688 kb on + strandat 1879.688 kb on + strandat 1879.691 kb on + strandat 1879.692 kb on - strandat 1879.841 kb on + strandat 1880.176 kb on + strand, within Pf6N2E2_1607at 1880.177 kb on - strand, within Pf6N2E2_1607at 1880.181 kb on - strand, within Pf6N2E2_1607at 1880.181 kb on - strand, within Pf6N2E2_1607at 1880.447 kb on + strand, within Pf6N2E2_1607at 1880.448 kb on - strand, within Pf6N2E2_1607at 1880.448 kb on - strand, within Pf6N2E2_1607at 1880.527 kb on + strand, within Pf6N2E2_1607at 1880.528 kb on - strand, within Pf6N2E2_1607

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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1,877,791 + Pf6N2E2_1605 0.36 -0.8
1,877,792 - Pf6N2E2_1605 0.36 -0.3
1,877,792 - Pf6N2E2_1605 0.36 +0.2
1,877,792 - Pf6N2E2_1605 0.36 +0.6
1,877,878 + Pf6N2E2_1605 0.43 -0.9
1,877,879 - Pf6N2E2_1605 0.43 -1.0
1,878,196 + Pf6N2E2_1605 0.68 -1.4
1,878,196 + Pf6N2E2_1605 0.68 -1.2
1,878,196 + Pf6N2E2_1605 0.68 -0.0
1,878,201 - Pf6N2E2_1605 0.69 -1.1
1,878,262 + Pf6N2E2_1605 0.74 -0.2
1,878,262 + Pf6N2E2_1605 0.74 -1.5
1,878,262 + Pf6N2E2_1605 0.74 -0.4
1,878,571 - -0.3
1,878,630 - -2.0
1,878,797 + Pf6N2E2_1606 0.17 -0.9
1,878,845 + Pf6N2E2_1606 0.21 -1.4
1,878,845 + Pf6N2E2_1606 0.21 -0.3
1,878,846 - Pf6N2E2_1606 0.21 -1.4
1,878,956 + Pf6N2E2_1606 0.32 -2.1
1,878,957 - Pf6N2E2_1606 0.32 -3.0
1,879,242 + Pf6N2E2_1606 0.58 -0.7
1,879,242 + Pf6N2E2_1606 0.58 -0.6
1,879,242 + Pf6N2E2_1606 0.58 -0.7
1,879,242 + Pf6N2E2_1606 0.58 -1.0
1,879,243 - Pf6N2E2_1606 0.58 +1.0
1,879,479 - Pf6N2E2_1606 0.79 -2.0
1,879,526 + Pf6N2E2_1606 0.83 -0.0
1,879,556 + Pf6N2E2_1606 0.86 +0.4
1,879,556 + Pf6N2E2_1606 0.86 -0.5
1,879,641 - -2.0
1,879,688 + +0.6
1,879,688 + -0.9
1,879,688 + +0.2
1,879,691 + -0.3
1,879,692 - -0.6
1,879,841 + -0.9
1,880,176 + Pf6N2E2_1607 0.23 -1.1
1,880,177 - Pf6N2E2_1607 0.23 +0.7
1,880,181 - Pf6N2E2_1607 0.23 -0.8
1,880,181 - Pf6N2E2_1607 0.23 +0.6
1,880,447 + Pf6N2E2_1607 0.52 +0.1
1,880,448 - Pf6N2E2_1607 0.52 -0.3
1,880,448 - Pf6N2E2_1607 0.52 -0.5
1,880,527 + Pf6N2E2_1607 0.60 +0.4
1,880,528 - Pf6N2E2_1607 0.60 +0.6

Or see this region's nucleotide sequence