Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07175

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
1,311,241	-		MMJJ_RS07170	0.40	-0.8
1,311,352	+		MMJJ_RS07170	0.49	-1.4
1,311,366	-		MMJJ_RS07170	0.50	-2.4
1,311,367	+		MMJJ_RS07170	0.50	-1.4
1,311,367	+		MMJJ_RS07170	0.50	-2.4
1,311,519	-		MMJJ_RS07170	0.62	-0.8
1,311,595	-		MMJJ_RS07170	0.67	-0.8
1,311,618	+		MMJJ_RS07170	0.69	-2.4
1,311,621	-		MMJJ_RS07170	0.69	-3.3
1,311,622	+		MMJJ_RS07170	0.70	-2.1
1,311,622	+		MMJJ_RS07170	0.70	-1.4
1,311,669	-		MMJJ_RS07170	0.73	+0.2
1,311,669	-		MMJJ_RS07170	0.73	-1.4
1,311,704	+				+0.2
1,311,804	-		MMJJ_RS07170	0.83	-0.8
1,311,852	-		MMJJ_RS07170	0.87	-0.8
1,311,855	-		MMJJ_RS07170	0.87	-1.4
1,311,859	-		MMJJ_RS07170	0.88	-2.1
1,312,005	+				+0.9
1,312,017	-				+0.6
1,312,056	-				-0.8
1,312,056	-				+1.1
1,312,056	-				+0.5
1,312,060	-				-1.4
1,312,061	+				-0.7
1,312,061	+				+1.1
1,312,061	+				-1.7
1,312,067	+				+0.7
1,312,077	-				-0.4
1,312,078	+				-0.2
1,312,084	+				-0.2
1,312,089	-				+0.4
1,312,096	-				+0.3
1,312,096	-				-0.2
1,312,097	+				-0.0
1,312,101	+				-0.1
1,312,103	-				-1.0
1,312,103	-				+1.0
1,312,103	-				+1.7
1,312,104	+				+0.2
1,312,104	+				+0.2
1,312,104	+				-0.9
1,312,104	+				-0.0
1,312,107	-				+0.1
1,312,107	-				-1.6
1,312,108	+				+0.7
1,312,108	+				+1.3
1,312,108	+				+0.5
1,312,109	-				-0.5
1,312,109	-				+1.1
1,312,109	-				+2.8
1,312,110	+				+0.1
1,312,110	+				-0.1
1,312,110	+				-1.6
1,312,110	+				-0.0
1,312,110	+				+2.1
1,312,110	+				+1.2
1,312,111	-				-1.8
1,312,111	-				+1.0
1,312,111	-				+0.4
1,312,111	-				+0.5
1,312,111	-				+2.0
1,312,111	-				+2.1
1,312,112	+				+1.0
1,312,112	+				-0.1
1,312,112	+				+0.2
1,312,112	+				+1.2
1,312,116	-				+1.8
1,312,117	+				+2.7
1,312,117	+				-0.4
1,312,117	+				-0.1
1,312,117	+				+0.2
1,312,118	-				+0.6
1,312,118	-				-0.3
1,312,121	-				+0.2
1,312,121	-				+1.8
1,312,122	+				-0.6
1,312,125	+				+2.0
1,312,126	-				-0.2
1,312,126	-				+1.1
1,312,126	-				+0.9
1,312,126	-				-0.4
1,312,127	+				-0.6
1,312,132	-				+2.1
1,312,176	+				+0.2
1,312,184	-				+0.5
1,312,184	-				+0.3
1,312,184	-				-0.1
1,312,184	-				+0.6
1,312,185	+				+0.7
1,312,185	+				+1.5
1,312,245	+				+1.2
1,312,257	+				-0.7
1,312,266	-				+1.8
1,312,266	-				-0.6
1,312,296	-				+0.4
1,312,318	+				-0.8
1,312,507	+		MMJJ_RS07175	0.15	+0.6
1,312,508	-		MMJJ_RS07175	0.15	-0.6
1,312,540	+		MMJJ_RS07175	0.16	-1.4
1,312,545	-		MMJJ_RS07175	0.16	+1.5
1,312,577	-		MMJJ_RS07175	0.18	-0.6
1,312,618	-		MMJJ_RS07175	0.19	+0.8
1,312,695	-		MMJJ_RS07175	0.23	-1.5
1,312,695	-		MMJJ_RS07175	0.23	+1.3
1,312,695	-		MMJJ_RS07175	0.23	+0.1
1,312,696	+		MMJJ_RS07175	0.23	+0.2
1,312,774	-		MMJJ_RS07175	0.26	-0.0
1,312,774	-		MMJJ_RS07175	0.26	+0.7
1,312,775	+		MMJJ_RS07175	0.26	+0.2
1,312,775	+		MMJJ_RS07175	0.26	+0.9
1,312,838	-		MMJJ_RS07175	0.29	-0.0
1,312,905	-		MMJJ_RS07175	0.32	+0.6
1,312,906	+		MMJJ_RS07175	0.32	+0.7
1,312,906	+		MMJJ_RS07175	0.32	+1.2
1,312,906	+		MMJJ_RS07175	0.32	+0.0
1,312,914	+		MMJJ_RS07175	0.32	+2.0
1,312,968	-		MMJJ_RS07175	0.35	+1.9
1,312,969	+		MMJJ_RS07175	0.35	-0.2
1,312,970	-		MMJJ_RS07175	0.35	+1.8
1,312,971	+		MMJJ_RS07175	0.35	+2.5
1,313,012	-		MMJJ_RS07175	0.37	+0.7
1,313,012	-		MMJJ_RS07175	0.37	-1.6
1,313,065	-		MMJJ_RS07175	0.39	+0.7
1,313,066	+		MMJJ_RS07175	0.39	+3.4
1,313,113	+		MMJJ_RS07175	0.41	+1.8
1,313,165	-		MMJJ_RS07175	0.44	+0.2
1,313,165	-		MMJJ_RS07175	0.44	+0.8
1,313,165	-		MMJJ_RS07175	0.44	+1.4
1,313,165	-		MMJJ_RS07175	0.44	+0.9
1,313,165	-		MMJJ_RS07175	0.44	+0.4
1,313,165	-		MMJJ_RS07175	0.44	+2.8
1,313,165	-		MMJJ_RS07175	0.44	+0.3
1,313,166	+		MMJJ_RS07175	0.44	+0.9
1,313,166	+		MMJJ_RS07175	0.44	+1.6
1,313,166	+		MMJJ_RS07175	0.44	+0.2
1,313,166	+		MMJJ_RS07175	0.44	+0.4
1,313,232	+		MMJJ_RS07175	0.47	+1.2
1,313,236	+		MMJJ_RS07175	0.47	+1.1
1,313,249	+		MMJJ_RS07175	0.47	-0.4
1,313,256	-		MMJJ_RS07175	0.48	+0.3
1,313,257	+		MMJJ_RS07175	0.48	+0.3
1,313,306	-		MMJJ_RS07175	0.50	+0.2
1,313,436	-		MMJJ_RS07175	0.56	+1.0
1,313,452	-		MMJJ_RS07175	0.56	+1.0
1,313,452	-		MMJJ_RS07175	0.56	+0.6
1,313,452	-				+1.2
1,313,459	-		MMJJ_RS07175	0.57	+0.8
1,313,460	+		MMJJ_RS07175	0.57	-0.4
1,313,465	+		MMJJ_RS07175	0.57	+0.1
1,313,538	+		MMJJ_RS07175	0.60	+0.5
1,313,546	-		MMJJ_RS07175	0.60	+0.3
1,313,622	+		MMJJ_RS07175	0.64	+2.2
1,313,637	-		MMJJ_RS07175	0.64	-0.9
1,313,638	+		MMJJ_RS07175	0.64	+0.1
1,313,642	-		MMJJ_RS07175	0.65	+1.0
1,313,642	-		MMJJ_RS07175	0.65	+0.7
1,313,643	+		MMJJ_RS07175	0.65	+0.2
1,313,663	-		MMJJ_RS07175	0.66	+0.6
1,313,709	-		MMJJ_RS07175	0.68	+0.3
1,313,710	+		MMJJ_RS07175	0.68	+1.0
1,313,710	+		MMJJ_RS07175	0.68	+1.0
1,313,713	+		MMJJ_RS07175	0.68	+0.4
1,313,722	-		MMJJ_RS07175	0.68	+1.1
1,313,722	-		MMJJ_RS07175	0.68	+0.2
1,313,723	+		MMJJ_RS07175	0.68	+2.2
1,313,732	-		MMJJ_RS07175	0.69	-0.2
1,313,733	+		MMJJ_RS07175	0.69	+0.4
1,313,744	-		MMJJ_RS07175	0.69	+2.1
1,313,744	-		MMJJ_RS07175	0.69	+2.1
1,313,744	-		MMJJ_RS07175	0.69	-0.7
1,313,745	+		MMJJ_RS07175	0.69	+2.2
1,313,745	+		MMJJ_RS07175	0.69	-0.3
1,313,752	+		MMJJ_RS07175	0.69	+0.2
1,313,763	-		MMJJ_RS07175	0.70	+0.5
1,313,768	-		MMJJ_RS07175	0.70	-0.0
1,313,768	-		MMJJ_RS07175	0.70	+0.6
1,313,769	+		MMJJ_RS07175	0.70	+0.8
1,313,769	+		MMJJ_RS07175	0.70	+0.2
1,313,805	-		MMJJ_RS07175	0.72	+2.1
1,313,806	+		MMJJ_RS07175	0.72	+1.7
1,313,834	-		MMJJ_RS07175	0.73	-0.4
1,313,835	+		MMJJ_RS07175	0.73	+0.1
1,313,835	+		MMJJ_RS07175	0.73	-0.6
1,313,837	-		MMJJ_RS07175	0.73	+0.4
1,313,859	-		MMJJ_RS07175	0.74	+0.5
1,313,869	-		MMJJ_RS07175	0.75	+0.9
1,313,923	+		MMJJ_RS07175	0.77	+1.0
1,313,928	+		MMJJ_RS07175	0.77	-0.1
1,314,000	-		MMJJ_RS07175	0.80	+1.8
1,314,008	-		MMJJ_RS07175	0.81	+0.6
1,314,017	-		MMJJ_RS07175	0.81	+0.5
1,314,066	-		MMJJ_RS07175	0.83	-0.5
1,314,125	-		MMJJ_RS07175	0.86	+0.1
1,314,132	+		MMJJ_RS07175	0.86	+0.4
1,314,156	-		MMJJ_RS07175	0.87	+1.8
1,314,156	-		MMJJ_RS07175	0.87	+2.6
1,314,157	+		MMJJ_RS07175	0.87	+1.6
1,314,216	+		MMJJ_RS07175	0.90	+0.6
1,314,216	+		MMJJ_RS07175	0.90	+1.0
1,314,219	-				+0.2
1,314,219	-				+0.4
1,314,220	+				+0.8
1,314,220	+				+3.1
1,314,220	+				-0.0
1,314,221	-				+0.3
1,314,249	+				+2.7
1,314,273	+				+0.9
1,314,328	+				+0.1
1,314,344	-				+0.2
1,314,345	+				-0.2
1,314,345	+				+2.1
1,314,349	+				+0.9
1,314,403	+				+1.1
1,314,452	+				+0.2
1,315,103	-				+0.2
1,315,108	-				+0.3
1,315,109	+				-0.2
1,315,224	+		MMJJ_RS07185	0.27	+0.4
1,315,391	-		MMJJ_RS07185	0.67	+0.6
1,315,392	+		MMJJ_RS07185	0.67	+0.5
1,315,392	+		MMJJ_RS07185	0.67	-1.4