Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06710

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS06705 and MMJJ_RS09325 are separated by 31 nucleotidesMMJJ_RS09325 and MMJJ_RS06710 are separated by 12 nucleotidesMMJJ_RS06710 and MMJJ_RS06715 are separated by 47 nucleotides MMJJ_RS06705: MMJJ_RS06705 - bifunctional NADP phosphatase/NAD kinase, at 1,236,733 to 1,238,433 _RS06705 MMJJ_RS09325: MMJJ_RS09325 - hypothetical protein, at 1,238,465 to 1,238,623 _RS09325 MMJJ_RS06710: MMJJ_RS06710 - TldD/PmbA family protein, at 1,238,636 to 1,240,012 _RS06710 MMJJ_RS06715: MMJJ_RS06715 - lactaldehyde dehydrogenase, at 1,240,060 to 1,241,457 _RS06715 Position (kb) 1238 1239 1240 1241Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1237.638 kb on + strand, within MMJJ_RS06705at 1237.658 kb on - strand, within MMJJ_RS06705at 1237.664 kb on + strand, within MMJJ_RS06705at 1237.841 kb on - strand, within MMJJ_RS06705at 1237.842 kb on + strand, within MMJJ_RS06705at 1238.035 kb on + strand, within MMJJ_RS06705at 1238.076 kb on - strandat 1238.094 kb on + strand, within MMJJ_RS06705at 1238.149 kb on - strand, within MMJJ_RS06705at 1238.296 kb on - strandat 1238.296 kb on - strandat 1238.377 kb on - strandat 1238.420 kb on - strandat 1238.421 kb on + strandat 1238.426 kb on - strandat 1238.426 kb on - strandat 1238.426 kb on - strandat 1238.431 kb on - strandat 1238.431 kb on - strandat 1238.492 kb on - strand, within MMJJ_RS09325at 1238.499 kb on - strand, within MMJJ_RS09325at 1238.500 kb on + strand, within MMJJ_RS09325at 1238.510 kb on + strand, within MMJJ_RS09325at 1238.517 kb on + strand, within MMJJ_RS09325at 1238.522 kb on - strand, within MMJJ_RS09325at 1238.531 kb on - strand, within MMJJ_RS09325at 1238.531 kb on - strand, within MMJJ_RS09325at 1238.535 kb on + strand, within MMJJ_RS09325at 1238.550 kb on - strand, within MMJJ_RS09325at 1238.550 kb on - strand, within MMJJ_RS09325at 1238.551 kb on + strand, within MMJJ_RS09325at 1238.561 kb on - strand, within MMJJ_RS09325at 1238.561 kb on - strand, within MMJJ_RS09325at 1238.562 kb on + strand, within MMJJ_RS09325at 1238.562 kb on + strand, within MMJJ_RS09325at 1238.566 kb on - strand, within MMJJ_RS09325at 1238.567 kb on + strand, within MMJJ_RS09325at 1238.598 kb on + strand, within MMJJ_RS09325at 1238.638 kb on + strandat 1238.660 kb on + strandat 1238.742 kb on + strandat 1238.848 kb on - strand, within MMJJ_RS06710at 1238.906 kb on - strand, within MMJJ_RS06710at 1238.907 kb on + strand, within MMJJ_RS06710at 1238.908 kb on - strand, within MMJJ_RS06710at 1238.921 kb on + strand, within MMJJ_RS06710at 1238.927 kb on - strand, within MMJJ_RS06710at 1238.959 kb on - strand, within MMJJ_RS06710at 1238.959 kb on - strand, within MMJJ_RS06710at 1238.964 kb on - strand, within MMJJ_RS06710at 1238.964 kb on - strand, within MMJJ_RS06710at 1238.964 kb on - strand, within MMJJ_RS06710at 1238.964 kb on - strand, within MMJJ_RS06710at 1238.964 kb on - strand, within MMJJ_RS06710at 1238.964 kb on - strand, within MMJJ_RS06710at 1238.964 kb on - strand, within MMJJ_RS06710at 1238.964 kb on - strand, within MMJJ_RS06710at 1238.965 kb on + strand, within MMJJ_RS06710at 1238.965 kb on + strand, within MMJJ_RS06710at 1238.965 kb on + strand, within MMJJ_RS06710at 1238.965 kb on + strand, within MMJJ_RS06710at 1238.965 kb on + strand, within MMJJ_RS06710at 1238.965 kb on + strand, within MMJJ_RS06710at 1238.965 kb on + strand, within MMJJ_RS06710at 1238.968 kb on - strand, within MMJJ_RS06710at 1238.968 kb on - strand, within MMJJ_RS06710at 1238.968 kb on - strand, within MMJJ_RS06710at 1238.968 kb on - strand, within MMJJ_RS06710at 1238.969 kb on + strand, within MMJJ_RS06710at 1238.969 kb on + strand, within MMJJ_RS06710at 1238.969 kb on + strand, within MMJJ_RS06710at 1238.969 kb on + strand, within MMJJ_RS06710at 1238.971 kb on - strand, within MMJJ_RS06710at 1238.972 kb on + strand, within MMJJ_RS06710at 1238.992 kb on - strand, within MMJJ_RS06710at 1238.992 kb on - strand, within MMJJ_RS06710at 1238.997 kb on + strand, within MMJJ_RS06710at 1239.067 kb on + strand, within MMJJ_RS06710at 1239.067 kb on + strand, within MMJJ_RS06710at 1239.074 kb on - strand, within MMJJ_RS06710at 1239.112 kb on - strand, within MMJJ_RS06710at 1239.136 kb on + strand, within MMJJ_RS06710at 1239.173 kb on - strand, within MMJJ_RS06710at 1239.180 kb on + strand, within MMJJ_RS06710at 1239.285 kb on + strand, within MMJJ_RS06710at 1239.406 kb on - strand, within MMJJ_RS06710at 1239.437 kb on + strand, within MMJJ_RS06710at 1239.564 kb on - strand, within MMJJ_RS06710at 1239.682 kb on - strand, within MMJJ_RS06710at 1239.683 kb on + strand, within MMJJ_RS06710at 1239.683 kb on + strand, within MMJJ_RS06710at 1239.683 kb on + strand, within MMJJ_RS06710at 1239.730 kb on - strand, within MMJJ_RS06710at 1239.734 kb on - strand, within MMJJ_RS06710at 1239.734 kb on - strand, within MMJJ_RS06710at 1239.734 kb on - strand, within MMJJ_RS06710at 1239.734 kb on - strand, within MMJJ_RS06710at 1239.734 kb on - strand, within MMJJ_RS06710at 1239.734 kb on - strand, within MMJJ_RS06710at 1239.734 kb on - strand, within MMJJ_RS06710at 1239.734 kb on - strand, within MMJJ_RS06710at 1239.734 kb on - strand, within MMJJ_RS06710at 1239.735 kb on + strand, within MMJJ_RS06710at 1239.735 kb on + strand, within MMJJ_RS06710at 1239.754 kb on - strand, within MMJJ_RS06710at 1239.755 kb on + strand, within MMJJ_RS06710at 1239.773 kb on - strand, within MMJJ_RS06710at 1239.812 kb on + strand, within MMJJ_RS06710at 1239.812 kb on + strand, within MMJJ_RS06710at 1239.839 kb on - strand, within MMJJ_RS06710at 1239.839 kb on - strand, within MMJJ_RS06710at 1239.840 kb on + strand, within MMJJ_RS06710at 1239.845 kb on + strand, within MMJJ_RS06710at 1239.851 kb on - strand, within MMJJ_RS06710at 1239.884 kb on - strandat 1239.907 kb on - strandat 1239.946 kb on + strandat 1239.986 kb on - strandat 1240.030 kb on + strandat 1240.034 kb on + strandat 1240.037 kb on + strandat 1240.041 kb on - strandat 1240.042 kb on + strandat 1240.042 kb on + strandat 1240.042 kb on + strandat 1240.061 kb on - strandat 1240.076 kb on + strandat 1240.087 kb on - strandat 1240.111 kb on + strandat 1240.112 kb on - strandat 1240.113 kb on + strandat 1240.194 kb on - strandat 1240.211 kb on - strand, within MMJJ_RS06715at 1240.242 kb on - strand, within MMJJ_RS06715at 1240.247 kb on + strand, within MMJJ_RS06715at 1240.251 kb on - strand, within MMJJ_RS06715at 1240.252 kb on + strand, within MMJJ_RS06715at 1240.390 kb on + strand, within MMJJ_RS06715at 1240.392 kb on - strand, within MMJJ_RS06715at 1240.438 kb on - strand, within MMJJ_RS06715at 1240.438 kb on - strand, within MMJJ_RS06715at 1240.489 kb on - strand, within MMJJ_RS06715at 1240.509 kb on - strand, within MMJJ_RS06715at 1240.509 kb on - strand, within MMJJ_RS06715at 1240.509 kb on - strand, within MMJJ_RS06715at 1240.510 kb on + strand, within MMJJ_RS06715at 1240.510 kb on + strand, within MMJJ_RS06715at 1240.575 kb on - strand, within MMJJ_RS06715at 1240.580 kb on - strand, within MMJJ_RS06715at 1240.580 kb on - strand, within MMJJ_RS06715at 1240.580 kb on - strand, within MMJJ_RS06715at 1240.580 kb on - strand, within MMJJ_RS06715at 1240.618 kb on - strand, within MMJJ_RS06715at 1240.618 kb on - strand, within MMJJ_RS06715at 1240.635 kb on - strand, within MMJJ_RS06715at 1240.693 kb on + strand, within MMJJ_RS06715at 1240.725 kb on - strand, within MMJJ_RS06715at 1240.774 kb on - strand, within MMJJ_RS06715at 1240.820 kb on + strand, within MMJJ_RS06715at 1240.937 kb on - strand, within MMJJ_RS06715at 1240.937 kb on - strand, within MMJJ_RS06715at 1240.937 kb on - strand, within MMJJ_RS06715at 1240.937 kb on - strand, within MMJJ_RS06715at 1240.937 kb on - strand, within MMJJ_RS06715at 1240.938 kb on + strand, within MMJJ_RS06715at 1240.938 kb on + strand, within MMJJ_RS06715at 1240.939 kb on - strand, within MMJJ_RS06715at 1240.940 kb on + strand, within MMJJ_RS06715at 1240.975 kb on - strand, within MMJJ_RS06715at 1240.976 kb on + strand, within MMJJ_RS06715at 1240.977 kb on - strand, within MMJJ_RS06715

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
remove
1,237,638 + MMJJ_RS06705 0.53 -0.8
1,237,658 - MMJJ_RS06705 0.54 -0.8
1,237,664 + MMJJ_RS06705 0.55 +0.2
1,237,841 - MMJJ_RS06705 0.65 -2.6
1,237,842 + MMJJ_RS06705 0.65 +0.2
1,238,035 + MMJJ_RS06705 0.77 -1.8
1,238,076 - -1.7
1,238,094 + MMJJ_RS06705 0.80 -2.1
1,238,149 - MMJJ_RS06705 0.83 +0.3
1,238,296 - -2.5
1,238,296 - -1.3
1,238,377 - -1.7
1,238,420 - -0.4
1,238,421 + +2.9
1,238,426 - -2.4
1,238,426 - -0.3
1,238,426 - -1.6
1,238,431 - +2.5
1,238,431 - -0.4
1,238,492 - MMJJ_RS09325 0.17 +2.1
1,238,499 - MMJJ_RS09325 0.21 -1.3
1,238,500 + MMJJ_RS09325 0.22 +0.1
1,238,510 + MMJJ_RS09325 0.28 -0.0
1,238,517 + MMJJ_RS09325 0.33 +0.3
1,238,522 - MMJJ_RS09325 0.36 -0.2
1,238,531 - MMJJ_RS09325 0.42 +2.3
1,238,531 - MMJJ_RS09325 0.42 +1.3
1,238,535 + MMJJ_RS09325 0.44 +0.6
1,238,550 - MMJJ_RS09325 0.53 -0.0
1,238,550 - MMJJ_RS09325 0.53 +1.2
1,238,551 + MMJJ_RS09325 0.54 -0.0
1,238,561 - MMJJ_RS09325 0.60 +1.0
1,238,561 - MMJJ_RS09325 0.60 +0.3
1,238,562 + MMJJ_RS09325 0.61 -0.7
1,238,562 + MMJJ_RS09325 0.61 +0.3
1,238,566 - MMJJ_RS09325 0.64 -0.8
1,238,567 + MMJJ_RS09325 0.64 +2.1
1,238,598 + MMJJ_RS09325 0.84 -0.4
1,238,638 + +0.7
1,238,660 + +0.9
1,238,742 + +0.4
1,238,848 - MMJJ_RS06710 0.15 +0.3
1,238,906 - MMJJ_RS06710 0.20 +0.3
1,238,907 + MMJJ_RS06710 0.20 -1.1
1,238,908 - MMJJ_RS06710 0.20 +0.4
1,238,921 + MMJJ_RS06710 0.21 +0.1
1,238,927 - MMJJ_RS06710 0.21 +2.2
1,238,959 - MMJJ_RS06710 0.23 +0.5
1,238,959 - MMJJ_RS06710 0.23 +0.8
1,238,964 - MMJJ_RS06710 0.24 +1.1
1,238,964 - MMJJ_RS06710 0.24 +1.0
1,238,964 - MMJJ_RS06710 0.24 -0.0
1,238,964 - MMJJ_RS06710 0.24 +0.1
1,238,964 - MMJJ_RS06710 0.24 -0.5
1,238,964 - MMJJ_RS06710 0.24 +0.2
1,238,964 - MMJJ_RS06710 0.24 +2.9
1,238,964 - MMJJ_RS06710 0.24 -0.6
1,238,965 + MMJJ_RS06710 0.24 -0.3
1,238,965 + MMJJ_RS06710 0.24 +0.4
1,238,965 + MMJJ_RS06710 0.24 -0.2
1,238,965 + MMJJ_RS06710 0.24 -0.2
1,238,965 + MMJJ_RS06710 0.24 +0.7
1,238,965 + MMJJ_RS06710 0.24 +0.3
1,238,965 + MMJJ_RS06710 0.24 +0.4
1,238,968 - MMJJ_RS06710 0.24 +2.1
1,238,968 - MMJJ_RS06710 0.24 +1.5
1,238,968 - MMJJ_RS06710 0.24 +0.6
1,238,968 - MMJJ_RS06710 0.24 +0.0
1,238,969 + MMJJ_RS06710 0.24 -1.6
1,238,969 + MMJJ_RS06710 0.24 +1.1
1,238,969 + MMJJ_RS06710 0.24 -0.7
1,238,969 + MMJJ_RS06710 0.24 -0.2
1,238,971 - MMJJ_RS06710 0.24 +0.5
1,238,972 + MMJJ_RS06710 0.24 +0.7
1,238,992 - MMJJ_RS06710 0.26 +0.2
1,238,992 - MMJJ_RS06710 0.26 +1.1
1,238,997 + MMJJ_RS06710 0.26 -2.3
1,239,067 + MMJJ_RS06710 0.31 +0.4
1,239,067 + MMJJ_RS06710 0.31 +1.6
1,239,074 - MMJJ_RS06710 0.32 +2.6
1,239,112 - MMJJ_RS06710 0.35 -0.1
1,239,136 + MMJJ_RS06710 0.36 +0.4
1,239,173 - MMJJ_RS06710 0.39 +0.5
1,239,180 + MMJJ_RS06710 0.40 +0.2
1,239,285 + MMJJ_RS06710 0.47 +0.3
1,239,406 - MMJJ_RS06710 0.56 -0.9
1,239,437 + MMJJ_RS06710 0.58 +1.6
1,239,564 - MMJJ_RS06710 0.67 +0.0
1,239,682 - MMJJ_RS06710 0.76 +0.7
1,239,683 + MMJJ_RS06710 0.76 -0.0
1,239,683 + MMJJ_RS06710 0.76 +2.0
1,239,683 + MMJJ_RS06710 0.76 -1.2
1,239,730 - MMJJ_RS06710 0.79 +0.6
1,239,734 - MMJJ_RS06710 0.80 +1.4
1,239,734 - MMJJ_RS06710 0.80 +0.3
1,239,734 - MMJJ_RS06710 0.80 +0.0
1,239,734 - MMJJ_RS06710 0.80 +0.5
1,239,734 - MMJJ_RS06710 0.80 +2.3
1,239,734 - MMJJ_RS06710 0.80 -0.7
1,239,734 - MMJJ_RS06710 0.80 -0.7
1,239,734 - MMJJ_RS06710 0.80 +0.2
1,239,734 - MMJJ_RS06710 0.80 +1.2
1,239,735 + MMJJ_RS06710 0.80 -0.4
1,239,735 + MMJJ_RS06710 0.80 +0.3
1,239,754 - MMJJ_RS06710 0.81 +0.8
1,239,755 + MMJJ_RS06710 0.81 -0.0
1,239,773 - MMJJ_RS06710 0.83 +0.1
1,239,812 + MMJJ_RS06710 0.85 -0.8
1,239,812 + MMJJ_RS06710 0.85 +0.7
1,239,839 - MMJJ_RS06710 0.87 +2.2
1,239,839 - MMJJ_RS06710 0.87 -0.2
1,239,840 + MMJJ_RS06710 0.87 +1.1
1,239,845 + MMJJ_RS06710 0.88 +0.6
1,239,851 - MMJJ_RS06710 0.88 -0.4
1,239,884 - -0.4
1,239,907 - +0.0
1,239,946 + +0.1
1,239,986 - +0.9
1,240,030 + -1.2
1,240,034 + -0.4
1,240,037 + +0.6
1,240,041 - +0.3
1,240,042 + +0.3
1,240,042 + +1.5
1,240,042 + +0.3
1,240,061 - -1.4
1,240,076 + -0.0
1,240,087 - -4.2
1,240,111 + -0.7
1,240,112 - -1.8
1,240,113 + -0.9
1,240,194 - -2.3
1,240,211 - MMJJ_RS06715 0.11 -2.6
1,240,242 - MMJJ_RS06715 0.13 -1.7
1,240,247 + MMJJ_RS06715 0.13 -3.1
1,240,251 - MMJJ_RS06715 0.14 -1.7
1,240,252 + MMJJ_RS06715 0.14 -3.3
1,240,390 + MMJJ_RS06715 0.24 -2.2
1,240,392 - MMJJ_RS06715 0.24 -3.3
1,240,438 - MMJJ_RS06715 0.27 -1.9
1,240,438 - MMJJ_RS06715 0.27 -2.7
1,240,489 - MMJJ_RS06715 0.31 -2.0
1,240,509 - MMJJ_RS06715 0.32 -2.7
1,240,509 - MMJJ_RS06715 0.32 -1.9
1,240,509 - MMJJ_RS06715 0.32 -4.0
1,240,510 + MMJJ_RS06715 0.32 -3.6
1,240,510 + MMJJ_RS06715 0.32 -4.2
1,240,575 - MMJJ_RS06715 0.37 -0.8
1,240,580 - MMJJ_RS06715 0.37 -0.6
1,240,580 - MMJJ_RS06715 0.37 -2.1
1,240,580 - MMJJ_RS06715 0.37 -0.8
1,240,580 - MMJJ_RS06715 0.37 -0.9
1,240,618 - MMJJ_RS06715 0.40 -4.8
1,240,618 - MMJJ_RS06715 0.40 -2.2
1,240,635 - MMJJ_RS06715 0.41 -1.3
1,240,693 + MMJJ_RS06715 0.45 -0.0
1,240,725 - MMJJ_RS06715 0.48 -2.0
1,240,774 - MMJJ_RS06715 0.51 -1.5
1,240,820 + MMJJ_RS06715 0.54 -2.7
1,240,937 - MMJJ_RS06715 0.63 -2.4
1,240,937 - MMJJ_RS06715 0.63 -1.7
1,240,937 - MMJJ_RS06715 0.63 -0.9
1,240,937 - MMJJ_RS06715 0.63 -3.2
1,240,937 - MMJJ_RS06715 0.63 -2.2
1,240,938 + MMJJ_RS06715 0.63 -1.7
1,240,938 + MMJJ_RS06715 0.63 -3.0
1,240,939 - MMJJ_RS06715 0.63 -3.8
1,240,940 + MMJJ_RS06715 0.63 -2.2
1,240,975 - MMJJ_RS06715 0.65 -0.3
1,240,976 + MMJJ_RS06715 0.66 -3.0
1,240,977 - MMJJ_RS06715 0.66 -2.3

Or see this region's nucleotide sequence