Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15790

Experiment: R2A with Selective_ion_mix_1 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Selective_ion_mix_1 1 X
3,475,389	+		LRK54_RS15780	0.31	-0.2
3,475,389	+		LRK54_RS15780	0.31	-0.6
3,475,390	-		LRK54_RS15780	0.31	-0.0
3,475,668	+		LRK54_RS15780	0.75	+1.1
3,475,668	+		LRK54_RS15780	0.75	-1.3
3,475,668	+		LRK54_RS15780	0.75	-0.2
3,475,669	-		LRK54_RS15780	0.76	-1.3
3,475,669	-		LRK54_RS15780	0.76	-0.6
3,475,669	-		LRK54_RS15780	0.76	-0.1
3,475,669	-		LRK54_RS15780	0.76	-0.2
3,475,767	+				-2.7
3,475,767	+				+0.7
3,475,767	+				-0.3
3,475,767	+				-0.3
3,475,767	+				-0.4
3,475,768	-				-0.2
3,475,768	-				+1.7
3,475,768	-				+0.5
3,475,768	-				-1.6
3,475,821	+				-1.0
3,475,821	+				-0.5
3,475,821	+				-1.0
3,475,821	+				-1.1
3,475,821	+				-2.1
3,475,821	+				+0.5
3,475,822	-				+0.0
3,475,822	-				+0.5
3,475,822	-				-0.2
3,475,822	-				-1.4
3,475,822	-				+0.6
3,475,822	-				-0.1
3,475,887	+		LRK54_RS15785	0.16	-1.8
3,475,887	+		LRK54_RS15785	0.16	-1.6
3,475,887	+		LRK54_RS15785	0.16	-1.2
3,475,887	+		LRK54_RS15785	0.16	-0.3
3,475,887	+		LRK54_RS15785	0.16	+1.2
3,475,887	+		LRK54_RS15785	0.16	-0.7
3,475,887	+		LRK54_RS15785	0.16	+0.3
3,475,887	+		LRK54_RS15785	0.16	-1.9
3,475,888	-		LRK54_RS15785	0.16	-0.1
3,475,888	-		LRK54_RS15785	0.16	-2.2
3,475,888	-		LRK54_RS15785	0.16	+0.6
3,475,888	-		LRK54_RS15785	0.16	+0.1
3,475,929	+		LRK54_RS15785	0.25	-1.0
3,475,929	+		LRK54_RS15785	0.25	-0.2
3,475,929	+		LRK54_RS15785	0.25	+0.7
3,475,929	+		LRK54_RS15785	0.25	-0.5
3,475,930	-		LRK54_RS15785	0.25	-2.3
3,475,930	-		LRK54_RS15785	0.25	-0.4
3,475,930	-		LRK54_RS15785	0.25	-1.5
3,475,930	-		LRK54_RS15785	0.25	-0.2
3,475,930	-		LRK54_RS15785	0.25	-0.7
3,476,064	+		LRK54_RS15785	0.55	-1.2
3,476,064	+		LRK54_RS15785	0.55	+1.6
3,476,064	+		LRK54_RS15785	0.55	-2.5
3,476,064	+		LRK54_RS15785	0.55	-0.9
3,476,064	+		LRK54_RS15785	0.55	-1.7
3,476,064	+		LRK54_RS15785	0.55	-0.1
3,476,064	+		LRK54_RS15785	0.55	-0.8
3,476,064	+		LRK54_RS15785	0.55	+0.2
3,476,065	-		LRK54_RS15785	0.55	+0.9
3,476,065	-		LRK54_RS15785	0.55	-1.8
3,476,065	-		LRK54_RS15785	0.55	+1.2
3,476,065	-		LRK54_RS15785	0.55	+1.2
3,476,065	-		LRK54_RS15785	0.55	-0.7
3,476,065	-		LRK54_RS15785	0.55	-1.7
3,476,065	-		LRK54_RS15785	0.55	+2.6
3,476,065	-		LRK54_RS15785	0.55	-2.4
3,476,065	-		LRK54_RS15785	0.55	+0.6
3,476,208	+		LRK54_RS15785	0.86	-1.0
3,476,208	+		LRK54_RS15785	0.86	-0.1
3,476,208	+		LRK54_RS15785	0.86	-0.9
3,476,208	+		LRK54_RS15785	0.86	+0.1
3,476,209	-		LRK54_RS15785	0.87	+0.3
3,476,209	-		LRK54_RS15785	0.87	-1.1
3,476,209	-		LRK54_RS15785	0.87	+1.0
3,476,209	-		LRK54_RS15785	0.87	+0.8
3,476,209	-		LRK54_RS15785	0.87	-0.1
3,476,248	+				+0.9
3,476,248	+				+0.2
3,476,248	+				-0.2
3,476,248	+				-1.1
3,476,248	+				-1.0
3,476,248	+				-2.3
3,476,249	-				+1.1
3,476,249	-				-1.6
3,476,249	-				+2.0
3,476,249	-				+0.6
3,476,249	-				+0.9
3,476,249	-				-3.2
3,476,249	-				-2.3
3,476,249	-				-1.0
3,476,249	-				-0.5
3,476,249	-				+0.5
3,476,249	-				-0.0
3,476,249	-				+1.1
3,476,249	-				-0.2
3,476,252	+				+0.0
3,476,252	+				-1.7
3,476,252	+				-0.2
3,476,252	+				-0.6
3,476,252	+				-0.5
3,476,252	+				-0.6
3,476,252	+				-1.2
3,476,252	+				-0.5
3,476,252	+				-2.2
3,476,252	+				-0.7
3,476,252	+				-2.5
3,476,252	+				+1.2
3,476,252	+				-1.8
3,476,252	+				-0.3
3,476,252	+				+0.7
3,476,252	+				-1.1
3,476,252	+				-0.2
3,476,252	+				+0.4
3,476,252	+				-0.6
3,476,252	+				+0.9
3,476,252	+				-1.2
3,476,252	+				-1.0
3,476,252	+				-0.6
3,476,252	+				-0.5
3,476,252	+				+2.5
3,476,252	+				+0.8
3,476,252	+				+0.7
3,476,252	+				-0.2
3,476,252	+				+0.5
3,476,252	+				+1.7
3,476,252	+				-0.2
3,476,252	+				-1.5
3,476,252	+				-2.2
3,476,252	+				-0.4
3,476,252	+				+0.6
3,476,252	+				-0.6
3,476,252	+				+1.0
3,476,252	+				-1.1
3,476,252	+				-0.7
3,476,252	+				-1.4
3,476,252	+				+0.0
3,476,252	+				+1.0
3,476,252	+				-0.4
3,476,252	+				+0.0
3,476,252	+				+1.2
3,476,253	-				-0.8
3,476,253	-				+0.1
3,476,253	-				+0.4
3,476,253	-				-0.5
3,476,253	-				+1.6
3,476,253	-				-0.3
3,476,253	-				+0.1
3,476,253	-				-1.4
3,476,253	-				+0.1
3,476,253	-				-0.6
3,476,253	-				-0.7
3,476,253	-				-0.7
3,476,253	-				-1.2
3,476,253	-				-0.7
3,476,253	-				+0.7
3,476,253	-				-0.3
3,476,253	-				+0.7
3,476,253	-				-0.5
3,476,253	-				+2.5
3,476,253	-				+0.3
3,476,253	-				-0.9
3,476,253	-				-0.4
3,476,253	-				+0.4
3,476,253	-				-2.3
3,476,253	-				-1.2
3,476,253	-				+0.0
3,476,253	-				-1.1
3,476,253	-				-1.6
3,476,253	-				+1.1
3,476,253	-				-1.0
3,476,253	-				-0.9
3,476,253	-				+0.0
3,476,253	-				-2.6
3,476,253	-				+0.1
3,476,253	-				+0.2
3,476,253	-				+0.4
3,476,253	-				+0.5
3,476,253	-				+1.6
3,476,253	-				-0.4
3,476,253	-				+0.2
3,476,253	-				+0.3
3,476,254	+				-0.6
3,476,256	-				-1.8
3,476,334	-				-1.1
3,476,334	-				+1.4
3,476,334	-				-0.9
3,476,334	-				-1.0
3,476,334	-				+0.1
3,476,526	+		LRK54_RS15790	0.11	-0.1
3,476,526	+		LRK54_RS15790	0.11	-1.1
3,476,526	+		LRK54_RS15790	0.11	+0.6
3,476,526	+		LRK54_RS15790	0.11	-0.3
3,476,526	+		LRK54_RS15790	0.11	-0.8
3,476,526	+		LRK54_RS15790	0.11	-3.0
3,476,526	+		LRK54_RS15790	0.11	-1.1
3,476,526	+		LRK54_RS15790	0.11	-1.5
3,476,526	+		LRK54_RS15790	0.11	-0.8
3,476,527	-		LRK54_RS15790	0.11	-1.8
3,476,527	-		LRK54_RS15790	0.11	+0.3
3,476,527	-		LRK54_RS15790	0.11	-1.4
3,476,527	-		LRK54_RS15790	0.11	-1.8
3,476,527	-		LRK54_RS15790	0.11	-0.7
3,476,527	-		LRK54_RS15790	0.11	+0.3
3,476,667	+		LRK54_RS15790	0.21	+0.2
3,476,667	+		LRK54_RS15790	0.21	+0.2
3,476,667	+		LRK54_RS15790	0.21	-0.0
3,476,667	+		LRK54_RS15790	0.21	+0.2
3,476,667	+		LRK54_RS15790	0.21	-0.4
3,476,667	+		LRK54_RS15790	0.21	-1.5
3,476,667	+		LRK54_RS15790	0.21	-0.9
3,476,667	+		LRK54_RS15790	0.21	+0.1
3,476,667	+		LRK54_RS15790	0.21	-1.0
3,476,667	+		LRK54_RS15790	0.21	-0.6
3,476,667	+		LRK54_RS15790	0.21	+1.5
3,476,667	+		LRK54_RS15790	0.21	-2.1
3,476,667	+		LRK54_RS15790	0.21	-2.2
3,476,667	+		LRK54_RS15790	0.21	+1.3
3,476,667	+		LRK54_RS15790	0.21	-1.5
3,476,667	+		LRK54_RS15790	0.21	-2.2
3,476,667	+		LRK54_RS15790	0.21	-0.0
3,476,667	+		LRK54_RS15790	0.21	-0.3
3,476,667	+		LRK54_RS15790	0.21	+1.0
3,476,668	-		LRK54_RS15790	0.21	+0.7
3,476,668	-		LRK54_RS15790	0.21	-0.4
3,476,668	-		LRK54_RS15790	0.21	+0.4
3,476,668	-		LRK54_RS15790	0.21	-0.3
3,476,668	-		LRK54_RS15790	0.21	-0.8
3,476,668	-		LRK54_RS15790	0.21	-0.7
3,476,668	-		LRK54_RS15790	0.21	-0.9
3,476,668	-		LRK54_RS15790	0.21	+1.1
3,476,668	-		LRK54_RS15790	0.21	+1.7
3,476,668	-		LRK54_RS15790	0.21	+0.7
3,476,668	-		LRK54_RS15790	0.21	-0.2
3,476,668	-		LRK54_RS15790	0.21	-0.6
3,476,668	-		LRK54_RS15790	0.21	-0.4
3,476,668	-		LRK54_RS15790	0.21	-0.7
3,476,668	-		LRK54_RS15790	0.21	+0.3
3,476,668	-		LRK54_RS15790	0.21	-0.1
3,476,668	-		LRK54_RS15790	0.21	-1.0
3,476,668	-		LRK54_RS15790	0.21	+1.2
3,476,668	-		LRK54_RS15790	0.21	-2.3
3,476,668	-		LRK54_RS15790	0.21	-1.0
3,476,668	-		LRK54_RS15790	0.21	+3.2
3,476,668	-		LRK54_RS15790	0.21	-1.3
3,476,668	-		LRK54_RS15790	0.21	-0.4
3,476,668	-		LRK54_RS15790	0.21	-0.7
3,476,668	-		LRK54_RS15790	0.21	-0.1
3,476,709	+		LRK54_RS15790	0.24	-0.1
3,476,709	+		LRK54_RS15790	0.24	-0.5
3,476,709	+		LRK54_RS15790	0.24	-0.7
3,476,709	+		LRK54_RS15790	0.24	+0.4
3,476,709	+		LRK54_RS15790	0.24	-0.2
3,476,709	+		LRK54_RS15790	0.24	+1.5
3,476,709	+		LRK54_RS15790	0.24	+1.2
3,476,709	+		LRK54_RS15790	0.24	-0.6
3,476,709	+		LRK54_RS15790	0.24	+0.5
3,476,709	+		LRK54_RS15790	0.24	+0.5
3,476,709	+		LRK54_RS15790	0.24	-1.4
3,476,709	+		LRK54_RS15790	0.24	+1.6
3,476,709	+		LRK54_RS15790	0.24	+0.6
3,476,709	+		LRK54_RS15790	0.24	-1.9
3,476,709	+		LRK54_RS15790	0.24	-1.3
3,476,709	+		LRK54_RS15790	0.24	+0.6
3,476,709	+		LRK54_RS15790	0.24	-1.0
3,476,709	+		LRK54_RS15790	0.24	-1.3
3,476,709	+		LRK54_RS15790	0.24	+0.6
3,476,709	+		LRK54_RS15790	0.24	+0.1
3,476,709	+		LRK54_RS15790	0.24	+1.0
3,476,709	+		LRK54_RS15790	0.24	+0.1
3,476,709	+		LRK54_RS15790	0.24	-1.4
3,476,709	+		LRK54_RS15790	0.24	+1.4
3,476,709	+		LRK54_RS15790	0.24	-1.3
3,476,709	+		LRK54_RS15790	0.24	+0.5
3,476,709	+		LRK54_RS15790	0.24	+2.0
3,476,709	+		LRK54_RS15790	0.24	+2.0
3,476,709	+		LRK54_RS15790	0.24	+0.4
3,476,709	+		LRK54_RS15790	0.24	+0.4
3,476,709	+		LRK54_RS15790	0.24	-2.4
3,476,709	+		LRK54_RS15790	0.24	-0.6
3,476,709	+		LRK54_RS15790	0.24	-0.4
3,476,709	+		LRK54_RS15790	0.24	-0.7
3,476,709	+		LRK54_RS15790	0.24	-0.1
3,476,709	+		LRK54_RS15790	0.24	-0.0
3,476,709	+		LRK54_RS15790	0.24	-2.8
3,476,709	+		LRK54_RS15790	0.24	+1.8
3,476,709	+		LRK54_RS15790	0.24	-1.7
3,476,709	+		LRK54_RS15790	0.24	-2.4
3,476,709	+		LRK54_RS15790	0.24	-0.5
3,476,709	+		LRK54_RS15790	0.24	-1.6
3,476,709	+		LRK54_RS15790	0.24	-0.1
3,476,710	-		LRK54_RS15790	0.24	+0.0
3,476,710	-		LRK54_RS15790	0.24	-1.5
3,476,710	-		LRK54_RS15790	0.24	+1.7
3,476,710	-		LRK54_RS15790	0.24	+0.6
3,476,710	-		LRK54_RS15790	0.24	-0.3
3,476,710	-		LRK54_RS15790	0.24	-1.8
3,476,710	-		LRK54_RS15790	0.24	+0.2
3,476,710	-		LRK54_RS15790	0.24	-0.5
3,476,710	-		LRK54_RS15790	0.24	+0.6
3,476,710	-		LRK54_RS15790	0.24	+0.8
3,476,710	-		LRK54_RS15790	0.24	+0.9
3,476,710	-		LRK54_RS15790	0.24	-1.4
3,476,710	-		LRK54_RS15790	0.24	-0.4
3,476,710	-		LRK54_RS15790	0.24	-1.0
3,476,710	-		LRK54_RS15790	0.24	-1.8
3,476,710	-		LRK54_RS15790	0.24	-1.1
3,476,710	-		LRK54_RS15790	0.24	-1.5
3,476,710	-		LRK54_RS15790	0.24	-0.1
3,476,710	-		LRK54_RS15790	0.24	-0.0
3,476,710	-		LRK54_RS15790	0.24	+1.2
3,476,710	-		LRK54_RS15790	0.24	+0.8
3,476,710	-		LRK54_RS15790	0.24	-1.0
3,476,710	-		LRK54_RS15790	0.24	-1.0
3,476,710	-		LRK54_RS15790	0.24	-0.1
3,476,710	-		LRK54_RS15790	0.24	-0.4
3,476,710	-		LRK54_RS15790	0.24	-0.5
3,476,710	-		LRK54_RS15790	0.24	-0.3
3,476,710	-		LRK54_RS15790	0.24	-1.6
3,476,710	-		LRK54_RS15790	0.24	-0.3
3,476,710	-		LRK54_RS15790	0.24	+0.6
3,476,710	-		LRK54_RS15790	0.24	-0.7
3,476,710	-		LRK54_RS15790	0.24	-0.3
3,476,710	-		LRK54_RS15790	0.24	-1.7
3,476,710	-		LRK54_RS15790	0.24	-1.5
3,476,710	-		LRK54_RS15790	0.24	-0.5
3,476,710	-		LRK54_RS15790	0.24	+0.5
3,476,710	-		LRK54_RS15790	0.24	-1.2
3,476,710	-		LRK54_RS15790	0.24	+2.1
3,476,710	-		LRK54_RS15790	0.24	-1.0
3,476,710	-		LRK54_RS15790	0.24	+0.7
3,476,710	-		LRK54_RS15790	0.24	-0.1
3,476,710	-		LRK54_RS15790	0.24	-1.7
3,476,710	-		LRK54_RS15790	0.24	-2.1
3,476,710	-		LRK54_RS15790	0.24	+0.2
3,476,710	-		LRK54_RS15790	0.24	+0.6
3,476,710	-		LRK54_RS15790	0.24	-0.3
3,476,710	-		LRK54_RS15790	0.24	-1.4
3,476,710	-		LRK54_RS15790	0.24	-0.1
3,476,710	-		LRK54_RS15790	0.24	+0.8
3,476,718	+		LRK54_RS15790	0.25	+0.6
3,476,718	+		LRK54_RS15790	0.25	-0.8
3,476,718	+		LRK54_RS15790	0.25	-0.4
3,476,719	-		LRK54_RS15790	0.25	+1.0
3,476,719	-		LRK54_RS15790	0.25	-1.2
3,476,719	-		LRK54_RS15790	0.25	-1.3
3,476,719	-		LRK54_RS15790	0.25	-0.1
3,476,910	+		LRK54_RS15790	0.39	-0.7
3,476,910	+		LRK54_RS15790	0.39	-0.4
3,476,910	+		LRK54_RS15790	0.39	-0.2
3,476,910	+		LRK54_RS15790	0.39	-0.2
3,476,910	+		LRK54_RS15790	0.39	-1.4
3,476,910	+		LRK54_RS15790	0.39	-1.2
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3,476,910	+		LRK54_RS15790	0.39	-0.3
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3,477,321	+		LRK54_RS15790	0.68	-0.6
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3,477,620	-				-1.3
3,477,818	+				-0.5
3,477,818	+				-1.1
3,477,818	+				+1.1
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