Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14200

Experiment: R2A with Selective_ion_mix_1 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Selective_ion_mix_1 1 X
3,164,568	+		LRK54_RS14195	0.65	+0.0
3,164,568	+		LRK54_RS14195	0.65	-0.2
3,164,569	-		LRK54_RS14195	0.65	-0.8
3,164,569	-		LRK54_RS14195	0.65	-1.0
3,164,569	-		LRK54_RS14195	0.65	+0.2
3,164,569	-		LRK54_RS14195	0.65	-0.4
3,164,847	+		LRK54_RS14195	0.81	-1.0
3,164,847	+		LRK54_RS14195	0.81	-1.6
3,164,848	-		LRK54_RS14195	0.81	-0.7
3,164,848	-		LRK54_RS14195	0.81	+1.0
3,164,848	-		LRK54_RS14195	0.81	+1.5
3,164,848	-		LRK54_RS14195	0.81	+0.4
3,164,883	+		LRK54_RS14195	0.83	-0.9
3,164,883	+		LRK54_RS14195	0.83	-1.2
3,164,883	+		LRK54_RS14195	0.83	-1.2
3,164,883	+		LRK54_RS14195	0.83	+1.0
3,164,884	-		LRK54_RS14195	0.83	-1.1
3,164,884	-		LRK54_RS14195	0.83	+0.0
3,164,884	-		LRK54_RS14195	0.83	-0.6
3,164,907	+		LRK54_RS14195	0.84	+0.0
3,164,907	+		LRK54_RS14195	0.84	+0.4
3,164,908	-		LRK54_RS14195	0.84	+0.6
3,165,295	+		LRK54_RS14200	0.10	-0.2
3,165,295	+		LRK54_RS14200	0.10	-0.1
3,165,295	+		LRK54_RS14200	0.10	-0.7
3,165,295	+		LRK54_RS14200	0.10	+1.2
3,165,296	-		LRK54_RS14200	0.10	+1.0
3,165,382	+		LRK54_RS14200	0.19	-0.3
3,165,383	-		LRK54_RS14200	0.19	-0.1
3,165,383	-		LRK54_RS14200	0.19	-1.6
3,165,383	-		LRK54_RS14200	0.19	+0.7
3,165,383	-		LRK54_RS14200	0.19	+0.5
3,165,414	+		LRK54_RS14200	0.22	-1.7
3,165,414	+		LRK54_RS14200	0.22	-0.3
3,165,414	+		LRK54_RS14200	0.22	-1.9
3,165,414	+		LRK54_RS14200	0.22	-0.8
3,165,414	+		LRK54_RS14200	0.22	-1.0
3,165,414	+		LRK54_RS14200	0.22	+0.0
3,165,414	+		LRK54_RS14200	0.22	-1.0
3,165,414	+		LRK54_RS14200	0.22	+0.7
3,165,415	-		LRK54_RS14200	0.22	-0.2
3,165,415	-		LRK54_RS14200	0.22	-0.0
3,165,415	-		LRK54_RS14200	0.22	+1.4
3,165,415	-		LRK54_RS14200	0.22	-0.1
3,165,415	-		LRK54_RS14200	0.22	+0.2
3,165,415	-		LRK54_RS14200	0.22	+0.4
3,165,415	-		LRK54_RS14200	0.22	+0.1
3,165,415	-		LRK54_RS14200	0.22	+0.6
3,165,416	-		LRK54_RS14200	0.22	+1.0
3,165,460	+		LRK54_RS14200	0.26	+0.9
3,165,460	+		LRK54_RS14200	0.26	-0.2
3,165,460	+		LRK54_RS14200	0.26	-2.0
3,165,460	+		LRK54_RS14200	0.26	+1.9
3,165,460	+		LRK54_RS14200	0.26	-1.5
3,165,460	+		LRK54_RS14200	0.26	-1.3
3,165,461	-		LRK54_RS14200	0.26	+1.0
3,165,461	-		LRK54_RS14200	0.26	-0.1
3,165,461	-		LRK54_RS14200	0.26	+0.7
3,165,461	-		LRK54_RS14200	0.26	-1.3
3,165,461	-		LRK54_RS14200	0.26	-0.2
3,165,461	-		LRK54_RS14200	0.26	+0.3
3,165,461	-		LRK54_RS14200	0.26	+0.2
3,165,461	-		LRK54_RS14200	0.26	-1.0
3,165,461	-		LRK54_RS14200	0.26	+1.4
3,165,461	-		LRK54_RS14200	0.26	-1.7
3,165,472	+		LRK54_RS14200	0.27	+1.7
3,165,472	+		LRK54_RS14200	0.27	-1.6
3,165,473	-		LRK54_RS14200	0.27	-1.2
3,165,473	-		LRK54_RS14200	0.27	-0.4
3,165,473	-		LRK54_RS14200	0.27	-0.5
3,165,499	+		LRK54_RS14200	0.30	-2.4
3,165,499	+		LRK54_RS14200	0.30	-1.2
3,165,499	+		LRK54_RS14200	0.30	-1.8
3,165,499	+		LRK54_RS14200	0.30	-0.0
3,165,499	+		LRK54_RS14200	0.30	-0.1
3,165,499	+		LRK54_RS14200	0.30	-0.4
3,165,499	+		LRK54_RS14200	0.30	+0.4
3,165,500	-		LRK54_RS14200	0.30	+0.1
3,165,500	-		LRK54_RS14200	0.30	-0.6
3,165,500	-		LRK54_RS14200	0.30	+1.5
3,165,500	-		LRK54_RS14200	0.30	+0.9
3,165,958	+		LRK54_RS14200	0.75	-0.8
3,166,023	+		LRK54_RS14200	0.81	-1.1
3,166,023	+		LRK54_RS14200	0.81	-0.4
3,166,023	+		LRK54_RS14200	0.81	-0.0
3,166,023	+		LRK54_RS14200	0.81	+0.2
3,166,023	+		LRK54_RS14200	0.81	+0.9
3,166,023	+		LRK54_RS14200	0.81	-0.3
3,166,023	+		LRK54_RS14200	0.81	-1.7
3,166,023	+		LRK54_RS14200	0.81	-1.7
3,166,023	+		LRK54_RS14200	0.81	-1.0
3,166,023	+		LRK54_RS14200	0.81	+1.0
3,166,024	-		LRK54_RS14200	0.81	+1.1
3,166,024	-		LRK54_RS14200	0.81	+0.1
3,166,024	-		LRK54_RS14200	0.81	-0.2
3,166,024	-		LRK54_RS14200	0.81	+0.7
3,166,024	-		LRK54_RS14200	0.81	-1.2
3,166,024	-		LRK54_RS14200	0.81	+0.8
3,166,024	-		LRK54_RS14200	0.81	-1.5
3,166,024	-		LRK54_RS14200	0.81	+0.5
3,166,024	-		LRK54_RS14200	0.81	+0.5
3,166,024	-		LRK54_RS14200	0.81	-0.2
3,166,024	-		LRK54_RS14200	0.81	+1.1
3,166,024	-		LRK54_RS14200	0.81	+0.7
3,166,024	-		LRK54_RS14200	0.81	+2.2
3,166,024	-		LRK54_RS14200	0.81	-1.5
3,166,024	-		LRK54_RS14200	0.81	+0.8
3,166,024	-		LRK54_RS14200	0.81	+0.5
3,166,024	-		LRK54_RS14200	0.81	-0.3
3,166,024	-		LRK54_RS14200	0.81	-1.0
3,166,087	+		LRK54_RS14200	0.87	-2.7
3,166,088	-		LRK54_RS14200	0.87	-0.2
3,166,088	-		LRK54_RS14200	0.87	+0.3
3,166,088	-		LRK54_RS14200	0.87	-1.6
3,166,088	-		LRK54_RS14200	0.87	-0.2
3,166,246	+				-0.1
3,166,246	+				-1.6
3,166,246	+				-0.1
3,166,246	+				-0.9
3,166,246	+				-0.1
3,166,246	+				+1.7
3,166,246	+				-1.2
3,166,246	+				-0.9
3,166,246	+				+0.3
3,166,246	+				+0.2
3,166,246	+				+1.7
3,166,246	+				-0.8
3,166,246	+				+1.0
3,166,246	+				-0.8
3,166,247	-				+0.1
3,166,247	-				+0.2
3,166,247	-				-0.3
3,166,247	-				+0.3
3,166,247	-				-0.7
3,166,247	-				+0.2
3,166,247	-				+0.9
3,166,247	-				+0.1
3,166,247	-				+0.8
3,166,247	-				+0.3
3,166,257	+				-0.5
3,166,257	+				+0.0
3,166,257	+				-1.5
3,166,258	-				-0.4
3,166,318	+		LRK54_RS14205	0.16	+0.0
3,166,319	-		LRK54_RS14205	0.17	+0.3
3,166,319	-		LRK54_RS14205	0.17	+2.4
3,166,417	+		LRK54_RS14205	0.40	+0.8
3,166,418	-		LRK54_RS14205	0.40	-0.1
3,166,487	+		LRK54_RS14205	0.57	-0.0
3,166,487	+		LRK54_RS14205	0.57	+0.5
3,166,487	+		LRK54_RS14205	0.57	+1.8
3,166,487	+		LRK54_RS14205	0.57	+0.7
3,166,487	+		LRK54_RS14205	0.57	-0.4
3,166,487	+		LRK54_RS14205	0.57	+0.4
3,166,487	+		LRK54_RS14205	0.57	-0.7
3,166,487	+		LRK54_RS14205	0.57	+0.4
3,166,488	-		LRK54_RS14205	0.57	-1.3
3,166,488	-		LRK54_RS14205	0.57	+0.0
3,166,488	-		LRK54_RS14205	0.57	-1.0
3,166,532	+		LRK54_RS14205	0.67	-1.1
3,166,532	+		LRK54_RS14205	0.67	-0.1
3,166,532	+		LRK54_RS14205	0.67	-0.9
3,166,532	+		LRK54_RS14205	0.67	-0.8
3,166,532	+		LRK54_RS14205	0.67	+1.0
3,166,533	-		LRK54_RS14205	0.68	-1.3
3,166,533	-		LRK54_RS14205	0.68	-0.1
3,166,533	-		LRK54_RS14205	0.68	+0.1
3,166,533	-		LRK54_RS14205	0.68	+1.2
3,166,533	-		LRK54_RS14205	0.68	-0.3
3,166,533	-		LRK54_RS14205	0.68	-0.5
3,166,533	-		LRK54_RS14205	0.68	-1.3
3,166,533	-		LRK54_RS14205	0.68	+1.6
3,166,533	-		LRK54_RS14205	0.68	-0.2
3,166,533	-		LRK54_RS14205	0.68	+1.7
3,166,715	-				+2.5
3,166,715	-				+1.1
3,166,715	-				-0.9
3,166,715	-				-0.8
3,166,715	-				-0.7