Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12935

Experiment: R2A with Selective_ion_mix_1 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Selective_ion_mix_1 1 X
2,889,554	+		LRK54_RS12925	0.87	-1.4
2,889,554	+		LRK54_RS12925	0.87	-1.0
2,889,554	+		LRK54_RS12925	0.87	-0.2
2,889,555	-		LRK54_RS12925	0.87	-0.2
2,889,555	-		LRK54_RS12925	0.87	+0.4
2,889,555	-		LRK54_RS12925	0.87	+0.9
2,889,555	-		LRK54_RS12925	0.87	-0.9
2,889,555	-		LRK54_RS12925	0.87	-1.0
2,889,587	+				-1.6
2,889,587	+				-2.3
2,889,587	+				-0.8
2,889,587	+				+0.4
2,889,587	+				-0.0
2,889,587	+				+0.4
2,889,587	+				-0.3
2,889,587	+				-0.6
2,889,587	+				-1.8
2,889,587	+				-1.0
2,889,587	+				+0.1
2,889,587	+				+1.2
2,889,587	+				+1.4
2,889,587	+				+0.1
2,889,587	+				-1.3
2,889,587	+				-0.1
2,889,587	+				-1.2
2,889,587	+				+0.2
2,889,587	+				-0.1
2,889,587	+				+0.5
2,889,587	+				+1.4
2,889,587	+				-0.4
2,889,587	+				+1.7
2,889,587	+				+0.7
2,889,587	+				-1.2
2,889,587	+				-1.5
2,889,587	+				-1.5
2,889,587	+				-1.7
2,889,587	+				+1.5
2,889,587	+				-0.9
2,889,587	+				+0.1
2,889,587	+				+0.4
2,889,587	+				-0.3
2,889,588	-				-0.7
2,889,588	-				-1.1
2,889,588	-				+1.1
2,889,588	-				+1.8
2,889,588	-				+0.8
2,889,588	-				+1.4
2,889,588	-				-0.2
2,889,588	-				-1.2
2,889,588	-				-2.3
2,889,588	-				-2.2
2,889,588	-				+0.7
2,889,588	-				-0.6
2,889,588	-				-2.0
2,889,588	-				-2.1
2,889,588	-				-1.1
2,889,588	-				+0.6
2,889,588	-				-0.9
2,889,588	-				+1.4
2,889,588	-				+1.5
2,889,588	-				+1.5
2,889,588	-				-0.2
2,889,588	-				+0.0
2,889,588	-				+0.6
2,889,588	-				+0.5
2,889,588	-				+1.0
2,889,588	-				-0.5
2,889,656	+				+1.0
2,889,656	+				+0.8
2,889,656	+				-0.7
2,889,656	+				-1.0
2,889,656	+				+0.1
2,889,657	-				+1.0
2,889,657	-				+1.5
2,889,657	-				-0.6
2,889,657	-				-1.0
2,889,756	+		LRK54_RS12930	0.11	+0.4
2,889,757	-		LRK54_RS12930	0.11	+0.3
2,889,757	-		LRK54_RS12930	0.11	+0.4
2,889,860	+		LRK54_RS12930	0.23	-1.4
2,889,860	+		LRK54_RS12930	0.23	-0.3
2,889,860	+		LRK54_RS12930	0.23	+0.2
2,889,860	+		LRK54_RS12930	0.23	-1.9
2,889,860	+		LRK54_RS12930	0.23	-1.7
2,889,860	+		LRK54_RS12930	0.23	-0.1
2,889,861	-		LRK54_RS12930	0.23	-0.1
2,889,861	-		LRK54_RS12930	0.23	-0.5
2,889,861	-		LRK54_RS12930	0.23	+1.2
2,889,861	-		LRK54_RS12930	0.23	-0.4
2,889,861	-		LRK54_RS12930	0.23	-0.2
2,889,861	-		LRK54_RS12930	0.23	-1.1
2,889,861	-		LRK54_RS12930	0.23	+1.4
2,889,861	-		LRK54_RS12930	0.23	-0.1
2,889,861	-		LRK54_RS12930	0.23	-2.3
2,889,861	-		LRK54_RS12930	0.23	-1.4
2,889,861	-		LRK54_RS12930	0.23	+0.2
2,889,861	-		LRK54_RS12930	0.23	-0.2
2,889,861	-		LRK54_RS12930	0.23	-2.5
2,889,861	-		LRK54_RS12930	0.23	+0.3
2,890,045	+		LRK54_RS12930	0.45	-1.5
2,890,045	+		LRK54_RS12930	0.45	-1.1
2,890,045	+		LRK54_RS12930	0.45	-1.4
2,890,046	-		LRK54_RS12930	0.45	-1.1
2,890,046	-		LRK54_RS12930	0.45	-0.6
2,890,563	+				-0.8
2,890,564	-				-1.4
2,890,564	-				+0.4
2,890,641	+		LRK54_RS12935	0.13	-0.0
2,890,641	+		LRK54_RS12935	0.13	-2.6
2,890,641	+		LRK54_RS12935	0.13	-0.5
2,890,641	+		LRK54_RS12935	0.13	+0.4
2,890,641	+		LRK54_RS12935	0.13	-0.2
2,890,641	+		LRK54_RS12935	0.13	-1.0
2,890,641	+		LRK54_RS12935	0.13	+0.3
2,890,642	-		LRK54_RS12935	0.13	+0.2
2,890,642	-		LRK54_RS12935	0.13	+0.7
2,890,642	-		LRK54_RS12935	0.13	-0.5
2,890,642	-		LRK54_RS12935	0.13	+1.8
2,890,642	-		LRK54_RS12935	0.13	+0.7
2,890,642	-		LRK54_RS12935	0.13	-1.6
2,890,642	-		LRK54_RS12935	0.13	+1.5
2,890,642	-		LRK54_RS12935	0.13	+0.0
2,890,642	-		LRK54_RS12935	0.13	+0.3
2,890,642	-		LRK54_RS12935	0.13	+1.0
2,890,642	-		LRK54_RS12935	0.13	+1.6
2,890,642	-		LRK54_RS12935	0.13	+0.8
2,890,642	-		LRK54_RS12935	0.13	-1.2
2,890,642	-		LRK54_RS12935	0.13	-1.8
2,890,642	-		LRK54_RS12935	0.13	-0.7
2,890,748	+		LRK54_RS12935	0.28	-1.1
2,890,748	+		LRK54_RS12935	0.28	-0.4
2,890,748	+		LRK54_RS12935	0.28	+0.1
2,890,748	+		LRK54_RS12935	0.28	+2.8
2,890,748	+		LRK54_RS12935	0.28	+0.9
2,890,748	+		LRK54_RS12935	0.28	-0.5
2,890,748	+		LRK54_RS12935	0.28	-0.3
2,890,748	+		LRK54_RS12935	0.28	-0.4
2,890,748	+		LRK54_RS12935	0.28	+1.3
2,890,748	+		LRK54_RS12935	0.28	-0.6
2,890,748	+		LRK54_RS12935	0.28	-1.0
2,890,748	+		LRK54_RS12935	0.28	-0.4
2,890,748	+		LRK54_RS12935	0.28	-2.2
2,890,748	+		LRK54_RS12935	0.28	-0.3
2,890,749	-		LRK54_RS12935	0.28	-1.2
2,890,749	-		LRK54_RS12935	0.28	-1.9
2,890,749	-		LRK54_RS12935	0.28	-1.3
2,890,749	-		LRK54_RS12935	0.28	-0.8
2,890,749	-		LRK54_RS12935	0.28	-1.1
2,890,749	-		LRK54_RS12935	0.28	+0.5
2,890,749	-		LRK54_RS12935	0.28	-0.8
2,890,866	+		LRK54_RS12935	0.45	-1.2
2,890,866	+		LRK54_RS12935	0.45	-1.5
2,890,867	-		LRK54_RS12935	0.45	-0.4
2,890,867	-		LRK54_RS12935	0.45	+0.3
2,890,867	-		LRK54_RS12935	0.45	-0.3
2,890,867	-		LRK54_RS12935	0.45	-0.6
2,890,965	+		LRK54_RS12935	0.59	+0.3
2,890,965	+		LRK54_RS12935	0.59	+1.5
2,890,965	+		LRK54_RS12935	0.59	-1.0
2,890,965	+		LRK54_RS12935	0.59	-0.6
2,890,965	+		LRK54_RS12935	0.59	-0.8
2,890,965	+		LRK54_RS12935	0.59	-0.6
2,890,965	+		LRK54_RS12935	0.59	-0.2
2,890,966	-		LRK54_RS12935	0.59	-0.8
2,890,966	-		LRK54_RS12935	0.59	-0.3
2,890,966	-		LRK54_RS12935	0.59	-1.0
2,890,966	-		LRK54_RS12935	0.59	-1.4
2,890,966	-		LRK54_RS12935	0.59	-1.3
2,890,966	-		LRK54_RS12935	0.59	-1.4
2,890,966	-		LRK54_RS12935	0.59	-2.3
2,890,966	-		LRK54_RS12935	0.59	+0.3
2,890,966	-		LRK54_RS12935	0.59	-0.2
2,890,971	+		LRK54_RS12935	0.59	-1.7
2,890,971	+		LRK54_RS12935	0.59	+0.4
2,890,971	+		LRK54_RS12935	0.59	-1.1
2,890,971	+		LRK54_RS12935	0.59	-1.4
2,890,971	+		LRK54_RS12935	0.59	-0.9
2,890,971	+		LRK54_RS12935	0.59	-1.4
2,890,971	+		LRK54_RS12935	0.59	-0.3
2,890,971	+		LRK54_RS12935	0.59	+2.1
2,890,971	+		LRK54_RS12935	0.59	-1.8
2,890,971	+		LRK54_RS12935	0.59	-0.3
2,890,971	+		LRK54_RS12935	0.59	+0.8
2,890,971	+		LRK54_RS12935	0.59	-0.3
2,890,971	+		LRK54_RS12935	0.59	-0.1
2,890,972	-		LRK54_RS12935	0.60	-2.4
2,890,972	-		LRK54_RS12935	0.60	-2.0
2,890,972	-		LRK54_RS12935	0.60	-0.6
2,890,972	-		LRK54_RS12935	0.60	-0.9
2,890,972	-		LRK54_RS12935	0.60	-1.5
2,890,972	-		LRK54_RS12935	0.60	-1.0
2,890,972	-		LRK54_RS12935	0.60	+0.1
2,890,972	-		LRK54_RS12935	0.60	-0.8
2,890,972	-		LRK54_RS12935	0.60	+0.6
2,890,972	-		LRK54_RS12935	0.60	+0.1
2,890,972	-		LRK54_RS12935	0.60	+1.1
2,890,972	-		LRK54_RS12935	0.60	-0.8
2,890,972	-		LRK54_RS12935	0.60	+0.2
2,890,972	-		LRK54_RS12935	0.60	-0.5
2,890,972	-		LRK54_RS12935	0.60	-1.8
2,891,079	+		LRK54_RS12935	0.75	-1.0
2,891,079	+		LRK54_RS12935	0.75	+0.0
2,891,079	+		LRK54_RS12935	0.75	+0.2
2,891,079	+		LRK54_RS12935	0.75	+0.5
2,891,079	+		LRK54_RS12935	0.75	-0.9
2,891,079	+		LRK54_RS12935	0.75	-1.5
2,891,079	+		LRK54_RS12935	0.75	+0.4
2,891,079	+		LRK54_RS12935	0.75	-0.2
2,891,079	+		LRK54_RS12935	0.75	-1.5
2,891,080	-		LRK54_RS12935	0.75	+0.2
2,891,080	-		LRK54_RS12935	0.75	-0.9
2,891,080	-		LRK54_RS12935	0.75	-0.3
2,891,080	-		LRK54_RS12935	0.75	-1.0
2,891,080	-		LRK54_RS12935	0.75	+1.2
2,891,157	+		LRK54_RS12935	0.86	-1.6
2,891,157	+		LRK54_RS12935	0.86	+1.4
2,891,157	+		LRK54_RS12935	0.86	+0.4
2,891,157	+		LRK54_RS12935	0.86	-2.7
2,891,157	+		LRK54_RS12935	0.86	-0.4
2,891,157	+		LRK54_RS12935	0.86	-1.5
2,891,157	+		LRK54_RS12935	0.86	+1.3
2,891,157	+		LRK54_RS12935	0.86	+0.7
2,891,157	+		LRK54_RS12935	0.86	-0.6
2,891,157	+		LRK54_RS12935	0.86	-0.1
2,891,157	+		LRK54_RS12935	0.86	-0.4
2,891,157	+		LRK54_RS12935	0.86	+0.4
2,891,157	+		LRK54_RS12935	0.86	-0.7
2,891,157	+		LRK54_RS12935	0.86	-0.3
2,891,157	+		LRK54_RS12935	0.86	-2.8
2,891,157	+		LRK54_RS12935	0.86	-0.8
2,891,157	+		LRK54_RS12935	0.86	-1.5
2,891,157	+		LRK54_RS12935	0.86	+1.3
2,891,157	+		LRK54_RS12935	0.86	-0.1
2,891,157	+		LRK54_RS12935	0.86	-0.9
2,891,157	+		LRK54_RS12935	0.86	+0.2
2,891,157	+		LRK54_RS12935	0.86	-0.1
2,891,157	+		LRK54_RS12935	0.86	-1.5
2,891,157	+		LRK54_RS12935	0.86	+0.2
2,891,157	+		LRK54_RS12935	0.86	-0.9
2,891,157	+		LRK54_RS12935	0.86	-0.2
2,891,157	+		LRK54_RS12935	0.86	+0.0
2,891,157	+		LRK54_RS12935	0.86	-1.2
2,891,157	+		LRK54_RS12935	0.86	-0.1
2,891,157	+		LRK54_RS12935	0.86	-0.1
2,891,158	-		LRK54_RS12935	0.86	-0.1
2,891,158	-		LRK54_RS12935	0.86	-1.1
2,891,158	-		LRK54_RS12935	0.86	-0.5
2,891,158	-		LRK54_RS12935	0.86	-0.1
2,891,158	-		LRK54_RS12935	0.86	-1.6
2,891,158	-		LRK54_RS12935	0.86	-1.5
2,891,158	-		LRK54_RS12935	0.86	-1.4
2,891,158	-		LRK54_RS12935	0.86	-2.2
2,891,158	-		LRK54_RS12935	0.86	-0.3
2,891,158	-		LRK54_RS12935	0.86	-0.2
2,891,158	-		LRK54_RS12935	0.86	-0.1
2,891,158	-		LRK54_RS12935	0.86	-0.9
2,891,158	-		LRK54_RS12935	0.86	-1.6
2,891,158	-		LRK54_RS12935	0.86	-1.2
2,891,158	-		LRK54_RS12935	0.86	-0.3
2,891,158	-		LRK54_RS12935	0.86	+1.0
2,891,158	-		LRK54_RS12935	0.86	-2.3
2,891,158	-		LRK54_RS12935	0.86	-1.8
2,891,293	+				+0.2
2,891,293	+				+0.6
2,891,293	+				-1.0
2,891,293	+				+0.2
2,891,294	-				+0.7
2,891,294	-				-1.6
2,891,294	-				-0.4
2,891,294	-				-1.0
2,891,294	-				-1.1
2,891,485	+		LRK54_RS12940	0.29	-1.0
2,891,485	+		LRK54_RS12940	0.29	+2.5
2,891,485	+		LRK54_RS12940	0.29	-1.6
2,891,485	+		LRK54_RS12940	0.29	+0.8
2,891,485	+		LRK54_RS12940	0.29	+0.2
2,891,485	+		LRK54_RS12940	0.29	-0.5
2,891,485	+		LRK54_RS12940	0.29	-1.8
2,891,485	+		LRK54_RS12940	0.29	-1.1
2,891,485	+		LRK54_RS12940	0.29	-0.8
2,891,486	-		LRK54_RS12940	0.29	-1.1
2,891,486	-		LRK54_RS12940	0.29	-0.5
2,891,486	-		LRK54_RS12940	0.29	-1.9
2,891,486	-		LRK54_RS12940	0.29	-2.3
2,891,486	-		LRK54_RS12940	0.29	+0.7
2,891,486	-		LRK54_RS12940	0.29	+0.8
2,891,486	-		LRK54_RS12940	0.29	-1.4
2,891,486	-		LRK54_RS12940	0.29	-1.7
2,891,486	-		LRK54_RS12940	0.29	-1.0
2,891,486	-		LRK54_RS12940	0.29	-0.2
2,891,486	-		LRK54_RS12940	0.29	-1.6
2,891,486	-		LRK54_RS12940	0.29	-0.6
2,891,486	-		LRK54_RS12940	0.29	+0.9
2,891,486	-		LRK54_RS12940	0.29	+1.2
2,891,599	+		LRK54_RS12940	0.46	-1.0
2,891,599	+		LRK54_RS12940	0.46	+0.3
2,891,599	+		LRK54_RS12940	0.46	-1.4
2,891,599	+		LRK54_RS12940	0.46	-0.6
2,891,600	-		LRK54_RS12940	0.46	-1.0
2,891,600	-		LRK54_RS12940	0.46	-0.4
2,891,600	-		LRK54_RS12940	0.46	-0.0
2,891,600	-		LRK54_RS12940	0.46	+0.5
2,891,974	+				+2.2
2,891,974	+				-0.2
2,891,974	+				+1.1