Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11470

Experiment: R2A with Selective_ion_mix_1 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Selective_ion_mix_1 1 X
2,543,518	+		LRK54_RS11465	0.17	-0.8
2,543,518	+		LRK54_RS11465	0.17	-1.6
2,543,518	+		LRK54_RS11465	0.17	+0.4
2,543,530	+		LRK54_RS11465	0.18	-0.5
2,543,530	+		LRK54_RS11465	0.18	-0.8
2,543,531	-		LRK54_RS11465	0.18	+0.7
2,543,531	-		LRK54_RS11465	0.18	-0.8
2,543,531	-		LRK54_RS11465	0.18	-2.4
2,543,605	+		LRK54_RS11465	0.25	-0.3
2,543,605	+		LRK54_RS11465	0.25	+1.3
2,543,606	-		LRK54_RS11465	0.25	-0.2
2,543,606	-		LRK54_RS11465	0.25	-0.1
2,543,647	+		LRK54_RS11465	0.29	-1.8
2,543,647	+		LRK54_RS11465	0.29	+0.3
2,543,647	+		LRK54_RS11465	0.29	-0.6
2,543,647	+		LRK54_RS11465	0.29	-1.2
2,543,647	+		LRK54_RS11465	0.29	-0.3
2,543,647	+		LRK54_RS11465	0.29	-0.7
2,543,647	+		LRK54_RS11465	0.29	+1.8
2,543,647	+		LRK54_RS11465	0.29	+0.7
2,543,647	+		LRK54_RS11465	0.29	+1.5
2,543,647	+		LRK54_RS11465	0.29	-2.1
2,543,647	+		LRK54_RS11465	0.29	-0.6
2,543,647	+		LRK54_RS11465	0.29	+1.7
2,543,647	+		LRK54_RS11465	0.29	-0.0
2,543,647	+		LRK54_RS11465	0.29	-0.7
2,543,648	-		LRK54_RS11465	0.29	-0.7
2,543,648	-		LRK54_RS11465	0.29	+0.6
2,543,648	-		LRK54_RS11465	0.29	+0.0
2,543,648	-		LRK54_RS11465	0.29	-1.6
2,543,648	-		LRK54_RS11465	0.29	+0.1
2,543,648	-		LRK54_RS11465	0.29	+0.7
2,543,648	-		LRK54_RS11465	0.29	+1.0
2,543,648	-		LRK54_RS11465	0.29	-0.5
2,543,648	-		LRK54_RS11465	0.29	+0.8
2,543,648	-		LRK54_RS11465	0.29	-0.2
2,543,648	-		LRK54_RS11465	0.29	+0.2
2,543,723	-		LRK54_RS11465	0.36	-0.8
2,543,723	-		LRK54_RS11465	0.36	-1.5
2,543,723	-		LRK54_RS11465	0.36	-2.1
2,543,764	+		LRK54_RS11465	0.40	-0.2
2,543,764	+		LRK54_RS11465	0.40	-0.6
2,543,764	+		LRK54_RS11465	0.40	-0.1
2,543,764	+		LRK54_RS11465	0.40	-2.2
2,543,764	+		LRK54_RS11465	0.40	+0.3
2,543,765	-		LRK54_RS11465	0.40	-2.5
2,543,765	-		LRK54_RS11465	0.40	+1.9
2,543,765	-		LRK54_RS11465	0.40	+0.2
2,543,765	-		LRK54_RS11465	0.40	-0.9
2,543,815	+		LRK54_RS11465	0.45	-1.4
2,543,815	+		LRK54_RS11465	0.45	+0.4
2,543,815	+		LRK54_RS11465	0.45	-1.4
2,543,815	+		LRK54_RS11465	0.45	+1.0
2,543,816	-		LRK54_RS11465	0.45	-0.3
2,543,816	-		LRK54_RS11465	0.45	-0.0
2,543,885	-		LRK54_RS11465	0.52	+1.6
2,543,891	-		LRK54_RS11465	0.52	-0.8
2,543,911	+		LRK54_RS11465	0.54	-2.7
2,543,911	+		LRK54_RS11465	0.54	-0.4
2,543,911	+		LRK54_RS11465	0.54	+0.5
2,543,911	+		LRK54_RS11465	0.54	+0.4
2,543,911	+		LRK54_RS11465	0.54	-2.9
2,543,911	+		LRK54_RS11465	0.54	+1.2
2,543,911	+		LRK54_RS11465	0.54	+0.2
2,543,911	+		LRK54_RS11465	0.54	-1.3
2,543,912	+		LRK54_RS11465	0.54	-0.6
2,543,912	-		LRK54_RS11465	0.54	-0.8
2,543,912	-		LRK54_RS11465	0.54	-0.1
2,543,912	-		LRK54_RS11465	0.54	+2.7
2,543,912	-		LRK54_RS11465	0.54	-1.7
2,543,912	-		LRK54_RS11465	0.54	+0.4
2,543,912	-		LRK54_RS11465	0.54	+1.7
2,543,912	-		LRK54_RS11465	0.54	-1.0
2,543,912	-		LRK54_RS11465	0.54	+1.5
2,543,995	+		LRK54_RS11465	0.62	-2.3
2,543,996	-		LRK54_RS11465	0.62	-0.6
2,543,996	-		LRK54_RS11465	0.62	-1.6
2,543,996	-		LRK54_RS11465	0.62	-0.7
2,544,070	-		LRK54_RS11465	0.70	-0.6
2,544,070	-		LRK54_RS11465	0.70	+2.2
2,544,169	+		LRK54_RS11465	0.79	-0.3
2,544,220	+		LRK54_RS11465	0.84	-1.9
2,544,220	+		LRK54_RS11465	0.84	+2.5
2,544,220	+		LRK54_RS11465	0.84	-0.6
2,544,220	+		LRK54_RS11465	0.84	+0.3
2,544,221	-		LRK54_RS11465	0.84	+0.7
2,544,221	-		LRK54_RS11465	0.84	+1.2
2,544,221	-		LRK54_RS11465	0.84	-0.9
2,544,221	-		LRK54_RS11465	0.84	-1.8
2,544,221	-		LRK54_RS11465	0.84	-0.8
2,544,290	-				-2.1
2,544,290	-				-2.0
2,544,290	-				+1.0
2,544,437	+				-1.0
2,544,437	+				-0.9
2,544,438	-				-0.6
2,544,438	-				-1.5
2,544,438	-				-0.9
2,544,438	-				-0.6
2,544,438	-				-0.4
2,544,438	-				-1.4
2,544,473	+				+1.4
2,544,473	+				-0.9
2,544,473	+				-1.8
2,544,474	-				-0.2
2,544,474	-				-2.7
2,544,474	-				-1.7
2,544,474	-				+1.4
2,544,474	-				+1.0
2,544,474	-				+0.5
2,544,474	-				-1.2
2,544,495	-		LRK54_RS11470	0.10	+1.9
2,544,713	+		LRK54_RS11470	0.40	+0.5
2,544,713	+		LRK54_RS11470	0.40	-1.3
2,544,713	+		LRK54_RS11470	0.40	-0.4
2,544,713	+		LRK54_RS11470	0.40	-1.0
2,544,714	-		LRK54_RS11470	0.40	+1.3
2,544,714	-		LRK54_RS11470	0.40	+1.6
2,544,714	-		LRK54_RS11470	0.40	-1.6
2,544,714	-		LRK54_RS11470	0.40	-1.8
2,544,714	-		LRK54_RS11470	0.40	+0.5
2,544,750	-		LRK54_RS11470	0.45	-0.3
2,544,751	-		LRK54_RS11470	0.45	-0.9
2,544,933	-		LRK54_RS11470	0.70	-0.7
2,544,974	+		LRK54_RS11470	0.76	-0.9
2,544,974	+		LRK54_RS11470	0.76	-0.4
2,544,974	+		LRK54_RS11470	0.76	-0.1
2,544,974	+		LRK54_RS11470	0.76	-1.0
2,544,975	-		LRK54_RS11470	0.76	-0.6
2,544,975	-		LRK54_RS11470	0.76	+0.3
2,545,146	+				-0.9
2,545,146	+				-1.1
2,545,146	+				-0.5
2,545,146	+				+0.8
2,545,146	+				-1.7
2,545,146	+				+0.6
2,545,146	+				-1.2
2,545,146	+				-0.3
2,545,146	+				-1.1
2,545,147	-				+1.6
2,545,147	-				+0.5
2,545,147	-				+0.2
2,545,147	-				-0.5
2,545,147	-				-0.5
2,545,147	-				-0.6
2,545,147	-				+2.2
2,545,147	-				-0.4
2,545,147	-				+1.2
2,545,147	-				-0.8
2,545,192	+				-0.6
2,545,192	+				+2.3
2,545,193	-				-1.5
2,545,315	+				-1.2
2,545,316	-				-0.4
2,545,316	-				+0.0
2,545,430	-		LRK54_RS11475	0.17	+1.9
2,545,430	-		LRK54_RS11475	0.17	-0.8
2,545,485	-		LRK54_RS11475	0.20	+1.3
2,545,485	-		LRK54_RS11475	0.20	+2.0
2,545,543	+		LRK54_RS11475	0.23	+0.4
2,545,543	+		LRK54_RS11475	0.23	-0.8
2,545,543	+		LRK54_RS11475	0.23	-0.6
2,545,543	+		LRK54_RS11475	0.23	+1.0
2,545,544	-		LRK54_RS11475	0.24	+0.8
2,545,544	-		LRK54_RS11475	0.24	-0.7
2,545,544	-		LRK54_RS11475	0.24	-0.9
2,545,687	+		LRK54_RS11475	0.32	-0.9
2,545,687	+		LRK54_RS11475	0.32	-0.0
2,545,687	+		LRK54_RS11475	0.32	-0.9
2,545,687	+		LRK54_RS11475	0.32	-0.3
2,545,687	+		LRK54_RS11475	0.32	-0.2
2,545,687	+		LRK54_RS11475	0.32	-1.2
2,545,687	+		LRK54_RS11475	0.32	-0.5
2,545,687	+		LRK54_RS11475	0.32	+0.5
2,545,687	+		LRK54_RS11475	0.32	+0.7
2,545,687	+		LRK54_RS11475	0.32	+0.2
2,545,687	+		LRK54_RS11475	0.32	+2.0
2,545,687	+		LRK54_RS11475	0.32	-1.3
2,545,687	+		LRK54_RS11475	0.32	-0.1
2,545,687	+		LRK54_RS11475	0.32	-0.1
2,545,687	+		LRK54_RS11475	0.32	-0.5
2,545,687	+		LRK54_RS11475	0.32	+0.3
2,545,687	+		LRK54_RS11475	0.32	+0.1
2,545,688	-		LRK54_RS11475	0.32	+0.8
2,545,688	-		LRK54_RS11475	0.32	-0.2
2,545,688	-		LRK54_RS11475	0.32	-0.6
2,545,688	-		LRK54_RS11475	0.32	+1.0
2,545,688	-		LRK54_RS11475	0.32	+0.7
2,545,688	-		LRK54_RS11475	0.32	+0.6
2,545,688	-		LRK54_RS11475	0.32	-1.2
2,545,688	-		LRK54_RS11475	0.32	-1.6
2,545,688	-		LRK54_RS11475	0.32	-0.3
2,545,688	-		LRK54_RS11475	0.32	-1.1
2,545,688	-		LRK54_RS11475	0.32	+1.4
2,545,688	-		LRK54_RS11475	0.32	+0.2
2,545,688	-		LRK54_RS11475	0.32	-0.8
2,545,688	-		LRK54_RS11475	0.32	-0.1
2,545,688	-		LRK54_RS11475	0.32	+0.2
2,545,688	-		LRK54_RS11475	0.32	+0.8
2,545,762	+		LRK54_RS11475	0.36	+0.3
2,545,763	-		LRK54_RS11475	0.37	-0.8