Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05615

Experiment: R2A with Selective_ion_mix_1 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Selective_ion_mix_1 1 X
1,208,826	+				-0.6
1,208,826	+				-0.2
1,208,826	+				-0.9
1,208,826	+				-0.6
1,208,826	+				-1.5
1,208,826	+				+0.8
1,208,826	+				-2.1
1,208,826	+				-0.8
1,208,826	+				-0.3
1,208,826	+				+0.6
1,208,827	-				-1.3
1,208,827	-				-0.3
1,208,827	-				-1.9
1,208,827	-				-1.1
1,208,827	-				-1.3
1,208,827	-				-2.5
1,208,827	-				+1.4
1,208,827	-				-0.7
1,208,831	+				-0.8
1,208,831	+				-2.1
1,208,831	+				-0.8
1,208,831	+				-0.6
1,208,832	-				+1.1
1,208,832	-				-2.4
1,208,832	-				+0.1
1,208,832	-				+2.2
1,208,832	-				+0.5
1,208,832	-				+1.4
1,208,832	-				-2.9
1,208,832	-				-0.5
1,208,866	+				+0.0
1,208,866	+				+0.3
1,208,866	+				+0.6
1,208,866	+				+0.5
1,208,866	+				+0.7
1,208,866	+				+0.4
1,208,866	+				-2.1
1,208,866	+				-0.9
1,208,866	+				-1.6
1,208,867	-				-1.0
1,208,867	-				+1.9
1,208,867	-				-0.5
1,208,867	-				+0.4
1,208,867	-				-1.1
1,208,867	-				-1.6
1,208,867	-				-0.1
1,208,867	-				+1.8
1,208,867	-				+2.0
1,208,961	+				-1.9
1,208,961	+				-0.6
1,208,962	-				-0.8
1,208,962	-				-0.1
1,209,023	+				-0.8
1,209,023	+				-1.7
1,209,023	+				-1.3
1,209,023	+				+0.2
1,209,023	+				-1.4
1,209,023	+				-0.3
1,209,023	+				-0.1
1,209,023	+				-1.9
1,209,023	+				+2.5
1,209,023	+				+0.7
1,209,023	+				+0.1
1,209,023	+				-0.8
1,209,023	+				+1.4
1,209,023	+				-1.4
1,209,023	+				+0.1
1,209,023	+				-2.5
1,209,023	+				-0.5
1,209,023	+				-1.3
1,209,024	-				+0.9
1,209,024	-				-0.7
1,209,024	-				-1.9
1,209,024	-				-0.1
1,209,024	-				-0.9
1,209,024	-				+0.1
1,209,024	-				-2.3
1,209,024	-				+0.4
1,209,024	-				-0.8
1,209,024	-				-0.6
1,209,024	-				-0.1
1,209,024	-				-1.6
1,209,024	-				-0.7
1,209,024	-				+0.4
1,209,024	-				-1.1
1,209,024	-				-1.0
1,209,024	-				+2.0
1,209,024	-				-0.1
1,209,024	-				-0.7
1,209,024	-				-2.9
1,209,024	-				-0.6
1,209,024	-				+1.0
1,209,024	-				-1.2
1,209,106	+				-0.8
1,209,106	+				+0.2
1,209,106	+				-0.2
1,209,106	+				-0.8
1,209,106	+				-0.9
1,209,106	+				-0.5
1,209,106	+				+0.7
1,209,106	+				-1.5
1,209,106	+				-1.4
1,209,106	+				+0.9
1,209,106	+				-0.9
1,209,107	-				+0.8
1,209,107	-				-1.1
1,209,107	-				-1.0
1,209,107	-				+1.0
1,209,107	-				-1.6
1,209,107	-				+0.5
1,209,107	-				-1.4
1,209,107	-				-1.0
1,209,107	-				-0.8
1,209,107	-				-0.8
1,209,107	-				+0.4
1,209,107	-				+2.4
1,209,107	-				+0.7
1,209,107	-				+1.6
1,209,107	-				-1.9
1,209,107	-				-0.3
1,209,107	-				-0.6
1,209,107	-				-0.7
1,209,107	-				-0.1
1,209,107	-				-1.4
1,209,107	-				-3.4
1,209,107	-				+1.5
1,209,113	+				+0.1
1,209,113	+				-1.0
1,209,113	+				-1.6
1,209,113	+				-2.0
1,209,113	+				-1.0
1,209,113	+				+0.6
1,209,113	+				-0.6
1,209,113	+				-1.6
1,209,113	+				+0.2
1,209,113	+				-0.9
1,209,113	+				-0.3
1,209,113	+				-0.5
1,209,113	+				-0.3
1,209,113	+				-1.2
1,209,113	+				-0.6
1,209,114	-				+0.6
1,209,114	-				+0.5
1,209,114	-				+0.4
1,209,114	-				-0.7
1,209,114	-				+0.4
1,209,114	-				-0.8
1,209,117	+				-2.4
1,209,117	+				-1.6
1,209,117	+				+1.3
1,209,117	+				-0.7
1,209,117	+				+0.1
1,209,118	-				+0.4
1,209,118	-				-0.8
1,209,118	-				-0.1
1,209,118	-				-1.2
1,209,118	-				+0.7
1,209,118	-				+0.6
1,209,134	+				-1.6
1,209,134	+				-0.2
1,209,134	+				+2.2
1,209,135	-				+0.4
1,209,135	-				-1.1
1,209,135	-				-1.2
1,209,149	+				-0.3
1,209,149	+				-2.0
1,209,150	-				-1.5
1,209,150	-				+0.8
1,209,150	-				-0.0
1,209,150	-				-1.4
1,209,150	-				+1.0
1,209,150	-				-0.6
1,209,164	+				+0.0
1,209,164	+				-1.2
1,209,164	+				+2.0
1,209,180	+				-0.3
1,209,180	+				-1.1
1,209,181	-				+0.5
1,209,181	-				-0.9
1,209,181	-				-1.6
1,209,181	-				+1.6
1,209,181	-				-1.1
1,209,181	-				-0.4
1,209,189	+				-2.4
1,209,189	+				+0.3
1,209,189	+				+0.3
1,209,189	+				-0.1
1,209,189	+				+0.4
1,209,189	+				-0.5
1,209,189	+				+1.8
1,209,189	+				-0.2
1,209,189	+				-0.6
1,209,189	+				-1.6
1,209,189	+				+0.0
1,209,190	-				+0.7
1,209,190	-				+0.7
1,209,190	-				-0.7
1,209,190	-				+0.8
1,209,190	-				-0.2
1,209,190	-				-0.2
1,209,190	-				+1.5
1,209,190	-				-1.1
1,209,190	-				-1.5
1,209,209	+				+0.2
1,209,209	+				-0.8
1,209,209	+				-1.4
1,209,209	+				-0.3
1,209,209	+				-1.9
1,209,209	+				+1.6
1,209,209	+				-1.9
1,209,209	+				-0.1
1,209,210	-				-3.0
1,209,210	-				-1.0
1,209,210	-				-1.3
1,209,210	-				-0.9
1,209,210	-				-0.0
1,209,210	-				-0.9
1,209,210	-				-0.3
1,209,214	+				+0.9
1,209,214	+				+2.0
1,209,214	+				+1.8
1,209,214	+				-1.4
1,209,214	+				+0.8
1,209,215	-				-0.8
1,209,215	-				+1.4
1,209,215	-				+2.2
1,209,215	-				+1.0
1,209,215	-				-0.7
1,209,215	-				+0.8
1,209,215	-				+1.9
1,209,215	-				+1.3
1,209,215	-				+0.2
1,209,215	-				-2.1
1,209,292	+				-0.7
1,209,306	+				+0.4
1,209,306	+				+0.0
1,209,307	-				-0.5
1,209,313	+				+0.3
1,209,313	+				+0.3
1,209,313	+				-0.7
1,209,313	+				+0.4
1,209,313	+				+1.5
1,209,313	+				-0.1
1,209,313	+				-0.2
1,209,313	+				-1.9
1,209,313	+				-0.3
1,209,314	-				+0.8
1,209,314	-				-2.0
1,209,314	-				-0.6
1,209,314	-				-1.1
1,209,314	-				-0.2
1,209,314	-				+1.5
1,209,331	+				+0.5
1,209,331	+				+1.1
1,209,331	+				+0.8
1,209,331	+				-0.5
1,209,331	+				+1.9
1,209,332	-				+0.0
1,209,332	-				-1.9
1,209,332	-				+0.4
1,209,332	-				+0.0
1,209,332	-				-0.5
1,209,332	-				+0.1
1,209,332	-				-0.7
1,209,332	-				-0.2
1,209,367	+		LRK54_RS05610	0.17	-0.3
1,209,367	+		LRK54_RS05610	0.17	+0.5
1,209,368	-		LRK54_RS05610	0.17	+2.7
1,209,389	+		LRK54_RS05610	0.22	-0.1
1,209,389	+		LRK54_RS05610	0.22	-0.0
1,209,389	+		LRK54_RS05610	0.22	-0.2
1,209,389	+		LRK54_RS05610	0.22	+1.7
1,209,389	+		LRK54_RS05610	0.22	+1.1
1,209,389	+		LRK54_RS05610	0.22	-0.2
1,209,390	-		LRK54_RS05610	0.22	-0.1
1,209,390	-		LRK54_RS05610	0.22	-0.7
1,209,390	-		LRK54_RS05610	0.22	+2.2
1,209,390	-		LRK54_RS05610	0.22	-1.1
1,209,390	-		LRK54_RS05610	0.22	-0.6
1,209,390	-		LRK54_RS05610	0.22	-0.2
1,209,390	-		LRK54_RS05610	0.22	-0.5
1,209,390	-		LRK54_RS05610	0.22	+0.3
1,209,390	-		LRK54_RS05610	0.22	-0.3
1,209,398	+		LRK54_RS05610	0.24	+0.3
1,209,398	+		LRK54_RS05610	0.24	+1.8
1,209,399	-		LRK54_RS05610	0.25	+0.9
1,209,399	-		LRK54_RS05610	0.25	-0.2
1,209,399	-		LRK54_RS05610	0.25	+0.2
1,209,399	-		LRK54_RS05610	0.25	-0.7
1,209,399	-		LRK54_RS05610	0.25	+0.9
1,209,437	+		LRK54_RS05610	0.34	+1.1
1,209,437	+		LRK54_RS05610	0.34	-0.8
1,209,437	+		LRK54_RS05610	0.34	+1.2
1,209,438	-		LRK54_RS05610	0.34	-0.7
1,209,438	-		LRK54_RS05610	0.34	+0.9
1,209,438	-		LRK54_RS05610	0.34	-0.6
1,209,450	-		LRK54_RS05610	0.37	-0.8
1,209,450	-		LRK54_RS05610	0.37	+0.7
1,209,450	-		LRK54_RS05610	0.37	-1.3
1,209,549	+		LRK54_RS05610	0.62	-0.1
1,209,550	-		LRK54_RS05610	0.62	+0.2
1,209,550	-		LRK54_RS05610	0.62	+0.3
1,209,550	-		LRK54_RS05610	0.62	+0.7
1,209,550	-		LRK54_RS05610	0.62	-0.4
1,209,550	-		LRK54_RS05610	0.62	+0.1
1,209,557	+		LRK54_RS05610	0.64	+0.6
1,209,557	+		LRK54_RS05610	0.64	+0.4
1,209,557	+		LRK54_RS05610	0.64	+0.9
1,209,557	+		LRK54_RS05610	0.64	+0.2
1,209,558	-		LRK54_RS05610	0.64	+1.4
1,209,558	-		LRK54_RS05610	0.64	-0.9
1,209,558	-		LRK54_RS05610	0.64	+3.2
1,209,558	-		LRK54_RS05610	0.64	+2.5
1,209,579	+		LRK54_RS05610	0.69	+1.0
1,209,580	-		LRK54_RS05610	0.69	+0.6
1,209,580	-		LRK54_RS05610	0.69	-0.8
1,209,583	+		LRK54_RS05610	0.70	-0.4
1,209,583	+		LRK54_RS05610	0.70	+0.7
1,209,583	+		LRK54_RS05610	0.70	-0.2
1,209,583	+		LRK54_RS05610	0.70	+0.4
1,209,583	+		LRK54_RS05610	0.70	-0.5
1,209,584	-		LRK54_RS05610	0.70	+0.4
1,209,584	-		LRK54_RS05610	0.70	-1.2
1,209,584	-		LRK54_RS05610	0.70	-1.7
1,209,597	-		LRK54_RS05610	0.74	-1.7
1,209,597	-		LRK54_RS05610	0.74	+0.1
1,209,605	-		LRK54_RS05610	0.76	-1.4
1,209,640	-		LRK54_RS05610	0.84	+0.2
1,209,673	+				-1.9
1,209,673	+				+0.2
1,209,674	-				-1.0
1,209,712	+				-1.1
1,209,713	-				+0.1
1,209,725	-				-0.1
1,209,725	-				-0.6
1,209,807	-				-0.0
1,209,816	+				+1.4
1,209,816	+				-1.6
1,209,817	-				+0.7
1,209,817	-				-1.4
1,209,824	-				+0.4
1,209,824	-				-0.1
1,209,873	-				-1.3
1,209,907	+				-0.1
1,209,907	+				+0.7
1,209,908	-				+0.6
1,209,921	-				+0.1
1,210,015	+		LRK54_RS05615	0.11	-0.6
1,210,044	+		LRK54_RS05615	0.13	-2.3
1,210,044	+		LRK54_RS05615	0.13	+0.2
1,210,044	+		LRK54_RS05615	0.13	-0.3
1,210,045	-		LRK54_RS05615	0.13	-1.8
1,210,046	+		LRK54_RS05615	0.13	+1.5
1,210,046	+		LRK54_RS05615	0.13	+1.0
1,210,046	+		LRK54_RS05615	0.13	-1.0
1,210,046	+		LRK54_RS05615	0.13	-1.9
1,210,046	+		LRK54_RS05615	0.13	+0.5
1,210,047	-		LRK54_RS05615	0.13	+0.7
1,210,047	-		LRK54_RS05615	0.13	-1.3
1,210,047	-		LRK54_RS05615	0.13	+0.0
1,210,047	-		LRK54_RS05615	0.13	-2.5
1,210,047	-		LRK54_RS05615	0.13	+1.2
1,210,138	+		LRK54_RS05615	0.18	+0.2
1,210,139	-		LRK54_RS05615	0.18	-0.8
1,210,186	+		LRK54_RS05615	0.20	-0.9
1,210,187	-		LRK54_RS05615	0.20	-1.4
1,210,187	-		LRK54_RS05615	0.20	+1.1
1,210,187	-		LRK54_RS05615	0.20	+1.7
1,210,187	-		LRK54_RS05615	0.20	+0.1
1,210,187	-		LRK54_RS05615	0.20	-0.1
1,210,253	+		LRK54_RS05615	0.24	+1.5
1,210,254	-		LRK54_RS05615	0.24	-1.0
1,210,254	-		LRK54_RS05615	0.24	+0.7
1,210,254	-		LRK54_RS05615	0.24	+0.7
1,210,290	+		LRK54_RS05615	0.26	+0.2
1,210,291	-		LRK54_RS05615	0.26	-1.3
1,210,292	+		LRK54_RS05615	0.26	-0.8
1,210,293	-		LRK54_RS05615	0.26	+1.5
1,210,295	+		LRK54_RS05615	0.26	-0.8
1,210,295	+		LRK54_RS05615	0.26	+2.2
1,210,295	+		LRK54_RS05615	0.26	-0.4
1,210,295	+		LRK54_RS05615	0.26	-0.8
1,210,296	-		LRK54_RS05615	0.26	-0.5
1,210,296	-		LRK54_RS05615	0.26	-0.3
1,210,296	-		LRK54_RS05615	0.26	+0.2
1,210,296	-		LRK54_RS05615	0.26	+1.8
1,210,393	-		LRK54_RS05615	0.31	+0.3
1,210,440	+		LRK54_RS05615	0.33	-1.2
1,210,485	+		LRK54_RS05615	0.36	+0.2
1,210,485	+		LRK54_RS05615	0.36	+0.7
1,210,486	-		LRK54_RS05615	0.36	-0.3
1,210,506	+		LRK54_RS05615	0.37	+1.2
1,210,506	+		LRK54_RS05615	0.37	-0.1
1,210,507	-		LRK54_RS05615	0.37	+0.4
1,210,507	-		LRK54_RS05615	0.37	+0.4
1,210,507	-		LRK54_RS05615	0.37	+0.7
1,210,531	+		LRK54_RS05615	0.38	-1.3
1,210,531	+		LRK54_RS05615	0.38	-1.4
1,210,531	+		LRK54_RS05615	0.38	+0.4
1,210,531	+		LRK54_RS05615	0.38	+0.7
1,210,532	-		LRK54_RS05615	0.38	-2.5
1,210,532	-		LRK54_RS05615	0.38	+0.5
1,210,541	-		LRK54_RS05615	0.39	-0.9
1,210,545	+		LRK54_RS05615	0.39	-0.2
1,210,546	-		LRK54_RS05615	0.39	-0.4
1,210,568	+		LRK54_RS05615	0.40	-0.7
1,210,568	+		LRK54_RS05615	0.40	-2.0
1,210,569	-		LRK54_RS05615	0.40	-1.7
1,210,569	-		LRK54_RS05615	0.40	-1.1
1,210,569	-		LRK54_RS05615	0.40	-2.4
1,210,597	+		LRK54_RS05615	0.42	-1.9
1,210,597	+		LRK54_RS05615	0.42	-0.7
1,210,598	-		LRK54_RS05615	0.42	+0.0
1,210,598	-		LRK54_RS05615	0.42	+1.1
1,210,601	+		LRK54_RS05615	0.42	+1.7
1,210,602	-		LRK54_RS05615	0.42	-1.1
1,210,628	-		LRK54_RS05615	0.43	-0.5
1,210,645	+		LRK54_RS05615	0.44	+0.1
1,210,646	-		LRK54_RS05615	0.44	+0.4
1,210,646	-		LRK54_RS05615	0.44	+1.3
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1,210,807	+		LRK54_RS05615	0.53	-1.6
1,210,824	+		LRK54_RS05615	0.54	+1.0
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1,211,027	-		LRK54_RS05615	0.64	-2.3
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1,211,353	+		LRK54_RS05615	0.82	-1.9
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