Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04335

Experiment: R2A with Selective_ion_mix_1 1 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS04330 and LRK54_RS04335 are separated by 79 nucleotidesLRK54_RS04335 and LRK54_RS04340 are separated by 98 nucleotidesLRK54_RS04340 and LRK54_RS04345 are separated by 5 nucleotides LRK54_RS04330: LRK54_RS04330 - valine--tRNA ligase, at 913,569 to 916,397 _RS04330 LRK54_RS04335: LRK54_RS04335 - class I SAM-dependent methyltransferase, at 916,477 to 917,163 _RS04335 LRK54_RS04340: LRK54_RS04340 - ribosomal protein S18-alanine N-acetyltransferase, at 917,262 to 917,732 _RS04340 LRK54_RS04345: LRK54_RS04345 - hypothetical protein, at 917,738 to 918,238 _RS04345 Position (kb) 916 917 918Strain fitness (log2 ratio) -2 -1 0 1 2 3at 916.559 kb on + strand, within LRK54_RS04335at 916.559 kb on + strand, within LRK54_RS04335at 916.559 kb on + strand, within LRK54_RS04335at 916.559 kb on + strand, within LRK54_RS04335at 916.559 kb on + strand, within LRK54_RS04335at 916.560 kb on - strand, within LRK54_RS04335at 916.560 kb on - strand, within LRK54_RS04335at 916.560 kb on - strand, within LRK54_RS04335at 916.562 kb on + strand, within LRK54_RS04335at 916.562 kb on + strand, within LRK54_RS04335at 916.563 kb on - strand, within LRK54_RS04335at 916.563 kb on - strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.735 kb on + strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.736 kb on - strand, within LRK54_RS04335at 916.739 kb on + strand, within LRK54_RS04335at 916.739 kb on + strand, within LRK54_RS04335at 916.739 kb on + strand, within LRK54_RS04335at 916.739 kb on + strand, within LRK54_RS04335at 916.739 kb on + strand, within LRK54_RS04335at 916.739 kb on + strand, within LRK54_RS04335at 916.739 kb on + strand, within LRK54_RS04335at 916.739 kb on + strand, within LRK54_RS04335at 916.740 kb on - strand, within LRK54_RS04335at 916.740 kb on - strand, within LRK54_RS04335at 916.740 kb on - strand, within LRK54_RS04335at 916.740 kb on - strand, within LRK54_RS04335at 916.740 kb on - strand, within LRK54_RS04335at 916.740 kb on - strand, within LRK54_RS04335at 916.740 kb on - strand, within LRK54_RS04335at 916.740 kb on - strand, within LRK54_RS04335at 916.740 kb on - strand, within LRK54_RS04335at 916.740 kb on - strand, within LRK54_RS04335at 916.740 kb on - strand, within LRK54_RS04335at 916.740 kb on - strand, within LRK54_RS04335at 916.740 kb on - strand, within LRK54_RS04335at 916.740 kb on - strand, within LRK54_RS04335at 916.740 kb on - strand, within LRK54_RS04335at 916.835 kb on + strand, within LRK54_RS04335at 916.835 kb on + strand, within LRK54_RS04335at 916.835 kb on + strand, within LRK54_RS04335at 916.835 kb on + strand, within LRK54_RS04335at 916.835 kb on + strand, within LRK54_RS04335at 916.835 kb on + strand, within LRK54_RS04335at 916.835 kb on + strand, within LRK54_RS04335at 916.836 kb on - strand, within LRK54_RS04335at 916.836 kb on - strand, within LRK54_RS04335at 916.836 kb on - strand, within LRK54_RS04335at 916.836 kb on - strand, within LRK54_RS04335at 916.836 kb on - strand, within LRK54_RS04335at 916.847 kb on + strand, within LRK54_RS04335at 916.847 kb on + strand, within LRK54_RS04335at 916.847 kb on + strand, within LRK54_RS04335at 916.847 kb on + strand, within LRK54_RS04335at 916.847 kb on + strand, within LRK54_RS04335at 916.848 kb on - strand, within LRK54_RS04335at 916.946 kb on + strand, within LRK54_RS04335at 916.946 kb on + strand, within LRK54_RS04335at 916.946 kb on + strand, within LRK54_RS04335at 916.946 kb on + strand, within LRK54_RS04335at 916.946 kb on + strand, within LRK54_RS04335at 916.946 kb on + strand, within LRK54_RS04335at 916.946 kb on + strand, within LRK54_RS04335at 916.946 kb on + strand, within LRK54_RS04335at 916.947 kb on - strand, within LRK54_RS04335at 916.947 kb on - strand, within LRK54_RS04335at 916.947 kb on - strand, within LRK54_RS04335at 916.947 kb on - strand, within LRK54_RS04335at 916.947 kb on - strand, within LRK54_RS04335at 916.955 kb on + strand, within LRK54_RS04335at 916.955 kb on + strand, within LRK54_RS04335at 916.955 kb on + strand, within LRK54_RS04335at 916.956 kb on - strand, within LRK54_RS04335at 916.956 kb on - strand, within LRK54_RS04335at 916.956 kb on - strand, within LRK54_RS04335at 916.956 kb on - strand, within LRK54_RS04335at 917.198 kb on + strandat 917.198 kb on + strandat 917.198 kb on + strandat 917.198 kb on + strandat 917.198 kb on + strandat 917.198 kb on + strandat 917.198 kb on + strandat 917.198 kb on + strandat 917.198 kb on + strandat 917.198 kb on + strandat 917.199 kb on - strandat 917.199 kb on - strandat 917.199 kb on - strandat 917.199 kb on - strandat 917.199 kb on - strandat 917.199 kb on - strandat 917.199 kb on - strandat 917.264 kb on - strandat 917.323 kb on + strand, within LRK54_RS04340at 917.323 kb on + strand, within LRK54_RS04340at 917.324 kb on - strand, within LRK54_RS04340at 917.324 kb on - strand, within LRK54_RS04340at 917.324 kb on - strand, within LRK54_RS04340at 917.324 kb on - strand, within LRK54_RS04340at 917.327 kb on - strand, within LRK54_RS04340at 917.327 kb on - strand, within LRK54_RS04340at 917.368 kb on + strand, within LRK54_RS04340at 917.368 kb on + strand, within LRK54_RS04340at 917.368 kb on + strand, within LRK54_RS04340at 917.369 kb on - strand, within LRK54_RS04340at 917.369 kb on - strand, within LRK54_RS04340at 917.369 kb on - strand, within LRK54_RS04340at 917.369 kb on - strand, within LRK54_RS04340at 917.369 kb on - strand, within LRK54_RS04340at 917.369 kb on - strand, within LRK54_RS04340at 917.369 kb on - strand, within LRK54_RS04340at 917.412 kb on + strand, within LRK54_RS04340at 917.413 kb on - strand, within LRK54_RS04340at 917.644 kb on + strand, within LRK54_RS04340at 917.644 kb on + strand, within LRK54_RS04340at 917.644 kb on + strand, within LRK54_RS04340at 917.644 kb on + strand, within LRK54_RS04340at 917.644 kb on + strand, within LRK54_RS04340at 917.644 kb on + strand, within LRK54_RS04340at 917.644 kb on + strand, within LRK54_RS04340at 917.644 kb on + strand, within LRK54_RS04340at 917.644 kb on + strand, within LRK54_RS04340at 917.645 kb on - strand, within LRK54_RS04340at 917.645 kb on - strand, within LRK54_RS04340at 917.645 kb on - strand, within LRK54_RS04340at 917.645 kb on - strand, within LRK54_RS04340at 917.645 kb on - strand, within LRK54_RS04340at 917.645 kb on - strand, within LRK54_RS04340at 917.645 kb on - strand, within LRK54_RS04340at 917.645 kb on - strand, within LRK54_RS04340

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Selective_ion_mix_1 1 X
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916,559 + LRK54_RS04335 0.12 +2.8
916,559 + LRK54_RS04335 0.12 -1.0
916,559 + LRK54_RS04335 0.12 -0.6
916,559 + LRK54_RS04335 0.12 -0.0
916,559 + LRK54_RS04335 0.12 -0.6
916,560 - LRK54_RS04335 0.12 -0.4
916,560 - LRK54_RS04335 0.12 +0.1
916,560 - LRK54_RS04335 0.12 -0.9
916,562 + LRK54_RS04335 0.12 +0.1
916,562 + LRK54_RS04335 0.12 +0.8
916,563 - LRK54_RS04335 0.13 -0.6
916,563 - LRK54_RS04335 0.13 -0.2
916,735 + LRK54_RS04335 0.38 +0.3
916,735 + LRK54_RS04335 0.38 +0.5
916,735 + LRK54_RS04335 0.38 +0.1
916,735 + LRK54_RS04335 0.38 +0.3
916,735 + LRK54_RS04335 0.38 -1.0
916,735 + LRK54_RS04335 0.38 -0.6
916,735 + LRK54_RS04335 0.38 -1.1
916,735 + LRK54_RS04335 0.38 -0.1
916,735 + LRK54_RS04335 0.38 +0.8
916,735 + LRK54_RS04335 0.38 +0.5
916,735 + LRK54_RS04335 0.38 +1.0
916,735 + LRK54_RS04335 0.38 +1.3
916,735 + LRK54_RS04335 0.38 -2.0
916,735 + LRK54_RS04335 0.38 -1.1
916,735 + LRK54_RS04335 0.38 -0.1
916,735 + LRK54_RS04335 0.38 -0.9
916,735 + LRK54_RS04335 0.38 +0.6
916,735 + LRK54_RS04335 0.38 +0.3
916,735 + LRK54_RS04335 0.38 -1.4
916,735 + LRK54_RS04335 0.38 -0.5
916,735 + LRK54_RS04335 0.38 +0.7
916,735 + LRK54_RS04335 0.38 -0.1
916,735 + LRK54_RS04335 0.38 +1.4
916,736 - LRK54_RS04335 0.38 -1.9
916,736 - LRK54_RS04335 0.38 -0.7
916,736 - LRK54_RS04335 0.38 -0.4
916,736 - LRK54_RS04335 0.38 +0.1
916,736 - LRK54_RS04335 0.38 -0.9
916,736 - LRK54_RS04335 0.38 -0.1
916,736 - LRK54_RS04335 0.38 -0.8
916,736 - LRK54_RS04335 0.38 -1.9
916,736 - LRK54_RS04335 0.38 -1.1
916,736 - LRK54_RS04335 0.38 +0.3
916,736 - LRK54_RS04335 0.38 +3.3
916,736 - LRK54_RS04335 0.38 +0.8
916,736 - LRK54_RS04335 0.38 +0.5
916,736 - LRK54_RS04335 0.38 +0.5
916,736 - LRK54_RS04335 0.38 +0.2
916,736 - LRK54_RS04335 0.38 -1.0
916,736 - LRK54_RS04335 0.38 +1.0
916,736 - LRK54_RS04335 0.38 +0.8
916,736 - LRK54_RS04335 0.38 -1.1
916,736 - LRK54_RS04335 0.38 +1.4
916,736 - LRK54_RS04335 0.38 -1.9
916,736 - LRK54_RS04335 0.38 -0.1
916,736 - LRK54_RS04335 0.38 -0.7
916,739 + LRK54_RS04335 0.38 -0.7
916,739 + LRK54_RS04335 0.38 -0.1
916,739 + LRK54_RS04335 0.38 +0.2
916,739 + LRK54_RS04335 0.38 -2.1
916,739 + LRK54_RS04335 0.38 +0.2
916,739 + LRK54_RS04335 0.38 -0.5
916,739 + LRK54_RS04335 0.38 -0.8
916,739 + LRK54_RS04335 0.38 -0.3
916,740 - LRK54_RS04335 0.38 -0.6
916,740 - LRK54_RS04335 0.38 -0.8
916,740 - LRK54_RS04335 0.38 -0.7
916,740 - LRK54_RS04335 0.38 -0.9
916,740 - LRK54_RS04335 0.38 -0.2
916,740 - LRK54_RS04335 0.38 -2.2
916,740 - LRK54_RS04335 0.38 +0.2
916,740 - LRK54_RS04335 0.38 -0.0
916,740 - LRK54_RS04335 0.38 -1.0
916,740 - LRK54_RS04335 0.38 +0.4
916,740 - LRK54_RS04335 0.38 -0.4
916,740 - LRK54_RS04335 0.38 -2.1
916,740 - LRK54_RS04335 0.38 +1.5
916,740 - LRK54_RS04335 0.38 +2.1
916,740 - LRK54_RS04335 0.38 +0.1
916,835 + LRK54_RS04335 0.52 -0.9
916,835 + LRK54_RS04335 0.52 -1.5
916,835 + LRK54_RS04335 0.52 +0.2
916,835 + LRK54_RS04335 0.52 +0.1
916,835 + LRK54_RS04335 0.52 -1.4
916,835 + LRK54_RS04335 0.52 +0.6
916,835 + LRK54_RS04335 0.52 -1.2
916,836 - LRK54_RS04335 0.52 -1.0
916,836 - LRK54_RS04335 0.52 +0.3
916,836 - LRK54_RS04335 0.52 +0.3
916,836 - LRK54_RS04335 0.52 -0.1
916,836 - LRK54_RS04335 0.52 -1.6
916,847 + LRK54_RS04335 0.54 -2.3
916,847 + LRK54_RS04335 0.54 -0.4
916,847 + LRK54_RS04335 0.54 -0.5
916,847 + LRK54_RS04335 0.54 -2.0
916,847 + LRK54_RS04335 0.54 -0.9
916,848 - LRK54_RS04335 0.54 -0.6
916,946 + LRK54_RS04335 0.68 -0.3
916,946 + LRK54_RS04335 0.68 +0.8
916,946 + LRK54_RS04335 0.68 +0.8
916,946 + LRK54_RS04335 0.68 +0.1
916,946 + LRK54_RS04335 0.68 +0.2
916,946 + LRK54_RS04335 0.68 +2.3
916,946 + LRK54_RS04335 0.68 +1.0
916,946 + LRK54_RS04335 0.68 +1.4
916,947 - LRK54_RS04335 0.68 -0.5
916,947 - LRK54_RS04335 0.68 +0.2
916,947 - LRK54_RS04335 0.68 -0.2
916,947 - LRK54_RS04335 0.68 -0.7
916,947 - LRK54_RS04335 0.68 +2.5
916,955 + LRK54_RS04335 0.70 +1.5
916,955 + LRK54_RS04335 0.70 +0.2
916,955 + LRK54_RS04335 0.70 +0.3
916,956 - LRK54_RS04335 0.70 -0.6
916,956 - LRK54_RS04335 0.70 -0.0
916,956 - LRK54_RS04335 0.70 +0.9
916,956 - LRK54_RS04335 0.70 -1.4
917,198 + -1.3
917,198 + +0.1
917,198 + +0.8
917,198 + -1.5
917,198 + -1.8
917,198 + +1.0
917,198 + -0.2
917,198 + +2.1
917,198 + -1.0
917,198 + -0.7
917,199 - +0.2
917,199 - -2.5
917,199 - -0.6
917,199 - -1.1
917,199 - -1.7
917,199 - -1.5
917,199 - +0.5
917,264 - +0.5
917,323 + LRK54_RS04340 0.13 +2.3
917,323 + LRK54_RS04340 0.13 +0.7
917,324 - LRK54_RS04340 0.13 +1.0
917,324 - LRK54_RS04340 0.13 +1.3
917,324 - LRK54_RS04340 0.13 -1.2
917,324 - LRK54_RS04340 0.13 +0.9
917,327 - LRK54_RS04340 0.14 +0.5
917,327 - LRK54_RS04340 0.14 -1.1
917,368 + LRK54_RS04340 0.23 +1.3
917,368 + LRK54_RS04340 0.23 -2.2
917,368 + LRK54_RS04340 0.23 +1.1
917,369 - LRK54_RS04340 0.23 -0.5
917,369 - LRK54_RS04340 0.23 -0.7
917,369 - LRK54_RS04340 0.23 -0.2
917,369 - LRK54_RS04340 0.23 -0.1
917,369 - LRK54_RS04340 0.23 -0.2
917,369 - LRK54_RS04340 0.23 +0.8
917,369 - LRK54_RS04340 0.23 +1.4
917,412 + LRK54_RS04340 0.32 +0.5
917,413 - LRK54_RS04340 0.32 -0.2
917,644 + LRK54_RS04340 0.81 -0.7
917,644 + LRK54_RS04340 0.81 -0.4
917,644 + LRK54_RS04340 0.81 +0.9
917,644 + LRK54_RS04340 0.81 +0.8
917,644 + LRK54_RS04340 0.81 -1.5
917,644 + LRK54_RS04340 0.81 -0.2
917,644 + LRK54_RS04340 0.81 +0.4
917,644 + LRK54_RS04340 0.81 +1.1
917,644 + LRK54_RS04340 0.81 -0.4
917,645 - LRK54_RS04340 0.81 -0.4
917,645 - LRK54_RS04340 0.81 +0.7
917,645 - LRK54_RS04340 0.81 +0.8
917,645 - LRK54_RS04340 0.81 -1.1
917,645 - LRK54_RS04340 0.81 +0.8
917,645 - LRK54_RS04340 0.81 -0.3
917,645 - LRK54_RS04340 0.81 -1.7
917,645 - LRK54_RS04340 0.81 +1.1

Or see this region's nucleotide sequence